Variant report

Variant	rs73331358
Chromosome Location	chr20:24709669-24709670
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs56888172	0.89[AMR][1000 genomes]
rs57470115	0.89[AMR][1000 genomes]
rs57844623	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57923170	0.89[AMR][1000 genomes]
rs58149951	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs58679653	0.89[AMR][1000 genomes]
rs59254947	0.89[AMR][1000 genomes]
rs60419449	1.00[AMR][1000 genomes]
rs6106949	0.89[AMR][1000 genomes]
rs6114859	1.00[AMR][1000 genomes]
rs6114863	1.00[AMR][1000 genomes]
rs6114867	1.00[AMR][1000 genomes]
rs6114869	1.00[AMR][1000 genomes]
rs6114871	0.89[AMR][1000 genomes]
rs6114872	0.89[AMR][1000 genomes]
rs6114874	0.89[AMR][1000 genomes]
rs61190938	0.89[AMR][1000 genomes]
rs61687961	1.00[EUR][1000 genomes]
rs7260865	1.00[AMR][1000 genomes]
rs73331334	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73333459	1.00[AMR][1000 genomes]
rs73333468	1.00[AMR][1000 genomes]
rs73333486	1.00[AMR][1000 genomes]
rs73333500	1.00[AMR][1000 genomes]
rs73335424	0.89[AMR][1000 genomes]
rs73335427	0.89[AMR][1000 genomes]
rs73335453	0.89[AMR][1000 genomes]
rs7360504	0.89[AMR][1000 genomes]
rs73902582	1.00[EUR][1000 genomes]
rs8123123	1.00[AMR][1000 genomes]
rs8123361	1.00[AMR][1000 genomes]
rs911173	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3332519	chr20:24535099-24815615	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1061412	chr20:24629468-24887869	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv544216	chr20:24629468-24887869	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv828705	chr20:24705746-24710623	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
6	nsv828706	chr20:24705746-24710967	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
7	esv3386739	chr20:24707152-24711550	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	n/a
8	nsv828707	chr20:24708186-24710967	Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24709600-24709800	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr20:24709600-24711000	ZNF genes & repeats	Thymus	Thymus

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