Variant report

Variant	rs61171607
Chromosome Location	chr7:69866450-69866451
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10486876	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10950202	0.92[ASN][1000 genomes]
rs10950203	0.92[ASN][1000 genomes]
rs11514670	0.92[ASN][1000 genomes]
rs11760753	0.92[ASN][1000 genomes]
rs11766624	0.87[ASN][1000 genomes]
rs11767563	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11771970	0.92[ASN][1000 genomes]
rs11773411	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12112891	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1557920	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2107618	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28673085	0.92[ASN][1000 genomes]
rs34944443	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55827919	0.92[ASN][1000 genomes]
rs55946510	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56107513	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56183636	0.92[ASN][1000 genomes]
rs56335297	0.92[ASN][1000 genomes]
rs56374900	0.92[ASN][1000 genomes]
rs56669413	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57139438	0.92[ASN][1000 genomes]
rs57450711	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57710795	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58707405	0.92[ASN][1000 genomes]
rs60311938	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60319470	0.92[ASN][1000 genomes]
rs60365988	0.82[EUR][1000 genomes]
rs66539368	0.92[ASN][1000 genomes]
rs66668176	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs66866439	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6946732	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6970184	0.92[ASN][1000 genomes]
rs6970937	0.92[ASN][1000 genomes]
rs73173566	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73173577	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73173581	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73173583	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73175903	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73175910	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73175914	0.93[EUR][1000 genomes]
rs73175915	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73175921	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73175928	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73175930	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73175942	0.92[ASN][1000 genomes]
rs73175948	0.92[ASN][1000 genomes]
rs73175955	0.92[ASN][1000 genomes]
rs73175957	0.92[ASN][1000 genomes]
rs7795355	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7797273	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018749	chr7:69149029-69995112	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv532782	chr7:69383651-70189959	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv869342	chr7:69671501-69958576	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv888337	chr7:69707076-69952187	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv529669	chr7:69709373-69974708	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1028870	chr7:69742438-69879231	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1029586	chr7:69817143-69978454	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv538927	chr7:69817143-69978454	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv888338	chr7:69860713-69952187	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69850000-69871400	Weak transcription	Fetal Stomach	stomach
2	chr7:69858800-69870200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:69859000-69868400	Weak transcription	Ovary	ovary
4	chr7:69864200-69871000	Weak transcription	Fetal Thymus	thymus
5	chr7:69864400-69870200	Weak transcription	Fetal Kidney	kidney
6	chr7:69866000-69870200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr7:69866200-69866800	Enhancers	Fetal Brain Female	brain
8	chr7:69866400-69869800	Weak transcription	Primary B cells from peripheral blood	blood

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