Variant report

Variant	rs73175915
Chromosome Location	chr7:69884910-69884911
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10486876	0.82[EUR][1000 genomes]
rs10950202	0.97[ASN][1000 genomes]
rs10950203	0.97[ASN][1000 genomes]
rs11514670	0.82[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs11760753	0.97[ASN][1000 genomes]
rs11766624	0.92[ASN][1000 genomes]
rs11767563	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11771970	0.97[ASN][1000 genomes]
rs11773411	0.93[EUR][1000 genomes]
rs12112891	0.93[EUR][1000 genomes]
rs1557920	0.93[EUR][1000 genomes]
rs2107618	0.85[EUR][1000 genomes]
rs28673085	0.82[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs34944443	0.93[EUR][1000 genomes]
rs55827919	0.97[ASN][1000 genomes]
rs55946510	0.93[EUR][1000 genomes]
rs56107513	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56183636	0.97[ASN][1000 genomes]
rs56335297	0.97[ASN][1000 genomes]
rs56374900	0.97[ASN][1000 genomes]
rs56669413	0.93[EUR][1000 genomes]
rs57139438	0.80[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs57450711	0.93[EUR][1000 genomes]
rs57489549	0.83[ASN][1000 genomes]
rs57710795	0.93[EUR][1000 genomes]
rs58707405	0.86[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs60311938	0.93[EUR][1000 genomes]
rs60319470	0.97[ASN][1000 genomes]
rs60365988	0.82[EUR][1000 genomes]
rs61171607	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs66539368	0.87[ASN][1000 genomes]
rs66668176	0.93[EUR][1000 genomes]
rs66866439	0.93[EUR][1000 genomes]
rs6946732	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6970184	0.97[ASN][1000 genomes]
rs6970937	0.97[ASN][1000 genomes]
rs73173566	0.87[EUR][1000 genomes]
rs73173577	0.93[EUR][1000 genomes]
rs73173581	0.93[EUR][1000 genomes]
rs73173583	0.93[EUR][1000 genomes]
rs73175903	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73175910	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73175914	0.93[EUR][1000 genomes]
rs73175921	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73175928	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73175930	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73175942	0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs73175948	0.86[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs73175955	0.97[ASN][1000 genomes]
rs73175957	0.97[ASN][1000 genomes]
rs7795355	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7797273	0.81[AFR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018749	chr7:69149029-69995112	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv532782	chr7:69383651-70189959	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv869342	chr7:69671501-69958576	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv888337	chr7:69707076-69952187	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv529669	chr7:69709373-69974708	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1029586	chr7:69817143-69978454	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv538927	chr7:69817143-69978454	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv888338	chr7:69860713-69952187	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv888339	chr7:69879914-69952187	ZNF genes & repeats Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv888340	chr7:69879914-69959059	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69871800-69908000	Weak transcription	Fetal Muscle Leg	muscle
2	chr7:69875600-69903600	Weak transcription	Spleen	Spleen
3	chr7:69880000-69888000	Enhancers	Fetal Brain Male	brain
4	chr7:69881400-69887400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr7:69882800-69885000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr7:69882800-69885400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr7:69882800-69886200	Weak transcription	Fetal Stomach	stomach
8	chr7:69882800-69886600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr7:69883000-69885200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr7:69883000-69886400	Weak transcription	Brain Substantia Nigra	brain
11	chr7:69883200-69886600	Weak transcription	Brain Cingulate Gyrus	brain
12	chr7:69883400-69886400	Weak transcription	Brain Angular Gyrus	brain
13	chr7:69883400-69886400	Weak transcription	Brain Anterior Caudate	brain
14	chr7:69883600-69885400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr7:69883800-69885600	Weak transcription	Brain Hippocampus Middle	brain
16	chr7:69884200-69887000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr7:69884400-69887200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr7:69884600-69885000	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr7:69884600-69886600	Enhancers	H1 Cell Line	embryonic stem cell
20	chr7:69884600-69887200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr7:69884600-69887200	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr7:69884600-69887400	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr7:69884800-69887000	Enhancers	Fetal Brain Female	brain
24	chr7:69884800-69887200	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr7:69884800-69887400	Enhancers	iPS-18 Cell Line	embryonic stem cell

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