Variant report

Variant	rs66539368
Chromosome Location	chr7:69877056-69877057
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10950202	0.84[ASN][1000 genomes]
rs10950203	0.84[ASN][1000 genomes]
rs11514670	0.84[ASN][1000 genomes]
rs11760753	0.84[ASN][1000 genomes]
rs11766624	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11771970	0.84[ASN][1000 genomes]
rs28673085	0.84[ASN][1000 genomes]
rs55827919	0.84[ASN][1000 genomes]
rs56107513	0.87[ASN][1000 genomes]
rs56183636	0.84[ASN][1000 genomes]
rs56335297	0.84[ASN][1000 genomes]
rs56374900	0.84[ASN][1000 genomes]
rs57139438	0.84[ASN][1000 genomes]
rs58707405	0.84[ASN][1000 genomes]
rs60319470	0.84[ASN][1000 genomes]
rs61171607	0.92[ASN][1000 genomes]
rs6946732	0.87[ASN][1000 genomes]
rs6970184	0.84[ASN][1000 genomes]
rs6970937	0.84[ASN][1000 genomes]
rs73175903	0.92[ASN][1000 genomes]
rs73175910	0.87[ASN][1000 genomes]
rs73175915	0.87[ASN][1000 genomes]
rs73175921	0.87[ASN][1000 genomes]
rs73175928	0.87[ASN][1000 genomes]
rs73175930	0.81[ASN][1000 genomes]
rs73175942	0.84[ASN][1000 genomes]
rs73175948	0.84[ASN][1000 genomes]
rs73175955	0.84[ASN][1000 genomes]
rs73175957	0.84[ASN][1000 genomes]
rs7795355	0.87[ASN][1000 genomes]
rs7797273	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018749	chr7:69149029-69995112	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv532782	chr7:69383651-70189959	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv869342	chr7:69671501-69958576	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv888337	chr7:69707076-69952187	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv529669	chr7:69709373-69974708	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1028870	chr7:69742438-69879231	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1029586	chr7:69817143-69978454	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv538927	chr7:69817143-69978454	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv888338	chr7:69860713-69952187	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69871800-69908000	Weak transcription	Fetal Muscle Leg	muscle
2	chr7:69872000-69882000	Weak transcription	Fetal Lung	lung
3	chr7:69872200-69881800	Weak transcription	Fetal Stomach	stomach
4	chr7:69872400-69880000	Weak transcription	Fetal Brain Male	brain
5	chr7:69874200-69879600	Weak transcription	Fetal Brain Female	brain
6	chr7:69875000-69883800	Weak transcription	Stomach Smooth Muscle	stomach
7	chr7:69875200-69879800	Weak transcription	GM12878-XiMat	blood
8	chr7:69875600-69880000	Weak transcription	Primary B cells from cord blood	blood
9	chr7:69875600-69903600	Weak transcription	Spleen	Spleen
10	chr7:69875800-69879600	Weak transcription	Primary B cells from peripheral blood	blood
11	chr7:69877000-69877200	Enhancers	Right Atrium	heart

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