Variant report

Variant	rs61175683
Chromosome Location	chr6:143833555-143833556
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:143833544-143834279	HepG2	liver:	n/a	n/a

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:143821189..143823852-chr6:143831025..143833660,2	MCF-7	breast:
2	chr6:143829496..143838775-chr6:143854591..143861568,17	MCF-7	breast:
3	chr6:143833086..143836035-chr6:144328243..144329863,2	MCF-7	breast:
4	chr6:143769666..143773987-chr6:143831101..143834872,5	MCF-7	breast:
5	chr6:143770206..143773921-chr6:143828795..143834716,12	K562	blood:
6	chr6:143830342..143833743-chr6:144326901..144329456,3	K562	blood:
7	chr6:143832949..143834464-chr6:144384295..144386790,2	K562	blood:
8	chr6:143381314..143382842-chr6:143831327..143834058,3	K562	blood:
9	chr6:143770206..143776731-chr6:143830754..143834661,9	K562	blood:
10	chr6:143832151..143834228-chr6:144285681..144288374,2	MCF-7	breast:

No data

Variant related genes	Relation type
FUCA2	TF binding region
ENSG00000118495	Chromatin interaction
ENSG00000034693	Chromatin interaction
ENSG00000001036	Chromatin interaction
ENSG00000146416	Chromatin interaction
ENSG00000223203	Chromatin interaction
ENSG00000189007	Chromatin interaction
ENSG00000112419	Chromatin interaction

rs_ID	r²[population]
rs10452657	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs10484801	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs17072720	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs17072725	0.85[AFR][1000 genomes]
rs57543960	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs57854102	0.89[AFR][1000 genomes]
rs7743944	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes]

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143832800-143834400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:143833200-143833600	Enhancers	H9 Cell Line	embryonic stem cell
3	chr6:143833200-143833600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:143833200-143833600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:143833200-143833600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr6:143833200-143833600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr6:143833200-143833600	Enhancers	Placenta	Placenta
8	chr6:143833200-143833600	Enhancers	Fetal Thymus	thymus
9	chr6:143833200-143833600	Enhancers	Left Ventricle	heart
10	chr6:143833200-143833600	Enhancers	Lung	lung
11	chr6:143833200-143834000	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr6:143833200-143834000	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr6:143833200-143834200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr6:143833200-143835800	Weak transcription	Gastric	stomach
15	chr6:143833200-143836000	Weak transcription	Ovary	ovary
16	chr6:143833200-143836000	Weak transcription	Small Intestine	intestine
17	chr6:143833200-143836200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr6:143833200-143836200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr6:143833200-143836200	Weak transcription	Brain Germinal Matrix	brain
20	chr6:143833200-143838200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr6:143833200-143849600	Weak transcription	Primary T cells from cord blood	blood
22	chr6:143833400-143833600	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr6:143833400-143833600	Enhancers	iPS-20b Cell Line	embryonic stem cell
24	chr6:143833400-143833600	Enhancers	Fetal Intestine Small	intestine
25	chr6:143833400-143833600	Enhancers	Fetal Muscle Leg	muscle
26	chr6:143833400-143833600	Enhancers	K562	blood
27	chr6:143833400-143833800	Enhancers	Brain Cingulate Gyrus	brain
28	chr6:143833400-143834400	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr6:143833400-143834400	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr6:143833400-143834400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr6:143833400-143834400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr6:143833400-143834400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr6:143833400-143834400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr6:143833400-143834400	Weak transcription	Stomach Mucosa	stomach
35	chr6:143833400-143834600	Enhancers	Duodenum Mucosa	Duodenum
36	chr6:143833400-143834600	Enhancers	GM12878-XiMat	blood
37	chr6:143833400-143834600	Enhancers	HepG2	liver
38	chr6:143833400-143835000	Enhancers	H1 Cell Line	embryonic stem cell
39	chr6:143833400-143835000	Enhancers	Primary T cells fromperipheralblood	blood
40	chr6:143833400-143835000	Enhancers	Fetal Intestine Large	intestine
41	chr6:143833400-143835200	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr6:143833400-143835800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr6:143833400-143835800	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr6:143833400-143835800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr6:143833400-143835800	Weak transcription	Colon Smooth Muscle	Colon
46	chr6:143833400-143835800	Weak transcription	Fetal Lung	lung
47	chr6:143833400-143835800	Weak transcription	Stomach Smooth Muscle	stomach
48	chr6:143833400-143836000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr6:143833400-143836000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr6:143833400-143836000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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