Variant report

Variant	rs10484801
Chromosome Location	chr6:143831871-143831872
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:143830223..143833460-chr6:143856589..143859655,5	MCF-7	breast:
2	chr6:143381342..143383522-chr6:143831139..143832827,2	K562	blood:
3	chr6:143828004..143830607-chr6:143830758..143832524,2	MCF-7	breast:
4	chr6:143770816..143772927-chr6:143831000..143833550,2	MCF-7	breast:
5	chr6:143821189..143823852-chr6:143831025..143833660,2	MCF-7	breast:
6	chr6:143829496..143838775-chr6:143854591..143861568,17	MCF-7	breast:
7	chr6:143830620..143833385-chr6:144127423..144130418,2	K562	blood:
8	chr6:143769666..143773987-chr6:143831101..143834872,5	MCF-7	breast:
9	chr6:143770206..143773921-chr6:143828795..143834716,12	K562	blood:
10	chr6:143830342..143833743-chr6:144326901..144329456,3	K562	blood:
11	chr6:143381314..143382842-chr6:143831327..143834058,3	K562	blood:
12	chr6:143770206..143776731-chr6:143830754..143834661,9	K562	blood:

No data

Variant related genes	Relation type
ENSG00000112419	Chromatin interaction
ENSG00000118495	Chromatin interaction
ENSG00000223203	Chromatin interaction
ENSG00000001036	Chromatin interaction
ENSG00000257065	Chromatin interaction
ENSG00000034693	Chromatin interaction
ENSG00000189007	Chromatin interaction
ENSG00000146416	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10452657	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17072720	0.91[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17072725	0.85[YRI][hapmap];0.89[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs57543960	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57854102	0.84[AFR][1000 genomes]
rs61175683	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7743944	0.88[AFR][1000 genomes]
rs9496648	0.81[AFR][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143772600-143832000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:143773400-143832000	Weak transcription	Fetal Brain Male	brain
3	chr6:143781000-143832000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr6:143811400-143832000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:143812400-143832200	Weak transcription	Spleen	Spleen
6	chr6:143812600-143832000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:143815800-143832200	Weak transcription	Small Intestine	intestine
8	chr6:143817800-143832200	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr6:143819200-143832000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr6:143820000-143832000	Weak transcription	Thymus	Thymus
11	chr6:143820400-143832000	Weak transcription	Fetal Thymus	thymus
12	chr6:143821800-143832000	Weak transcription	Primary B cells from cord blood	blood
13	chr6:143825400-143832000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr6:143827000-143832000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr6:143827600-143832000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr6:143828200-143832000	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr6:143828400-143832000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr6:143828400-143832000	Weak transcription	Aorta	Aorta
19	chr6:143828800-143832000	Weak transcription	Brain Germinal Matrix	brain
20	chr6:143829600-143832000	Weak transcription	Primary B cells from peripheral blood	blood
21	chr6:143829800-143832000	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr6:143830200-143832000	Enhancers	Fetal Heart	heart
23	chr6:143830200-143833000	Active TSS	Fetal Intestine Large	intestine
24	chr6:143830600-143832000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
25	chr6:143831000-143832000	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr6:143831000-143832400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr6:143831000-143832400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr6:143831000-143833000	Active TSS	Fetal Intestine Small	intestine
29	chr6:143831200-143832000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr6:143831200-143832400	Flanking Active TSS	Duodenum Mucosa	Duodenum
31	chr6:143831200-143833000	Active TSS	Ovary	ovary
32	chr6:143831200-143833000	Active TSS	Rectal Mucosa Donor 29	rectum
33	chr6:143831200-143833000	Active TSS	Rectal Mucosa Donor 31	rectum
34	chr6:143831200-143833000	Active TSS	Hela-S3	cervix
35	chr6:143831200-143833000	Active TSS	K562	blood
36	chr6:143831200-143833400	Active TSS	A549	lung
37	chr6:143831400-143832000	Enhancers	Primary T cells fromperipheralblood	blood
38	chr6:143831400-143832000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
39	chr6:143831400-143832000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
40	chr6:143831400-143832000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr6:143831400-143832600	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
42	chr6:143831400-143832800	Active TSS	GM12878-XiMat	blood
43	chr6:143831400-143833400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr6:143831600-143832000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr6:143831600-143832000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr6:143831600-143832000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr6:143831600-143832000	Enhancers	Breast Myoepithelial Primary Cells	Breast
48	chr6:143831600-143832000	Enhancers	Primary T helper naive cells from peripheral blood	blood
49	chr6:143831600-143832000	Enhancers	Primary T helper cells fromperipheralblood	blood
50	chr6:143831600-143832000	Enhancers	Brain Substantia Nigra	brain

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