Variant report

Variant	rs9496648
Chromosome Location	chr6:143825483-143825484
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143824207..143826466-chr6:144327937..144329566,2	K562	blood:

Variant related genes	Relation type
ENSG00000118495	Chromatin interaction

rs_ID	r²[population]
rs10452657	0.86[AFR][1000 genomes]
rs10484801	0.81[AFR][1000 genomes]
rs17072720	0.86[AFR][1000 genomes]
rs17072725	0.82[ASW][hapmap];0.81[LWK][hapmap]
rs35220041	1.00[EUR][1000 genomes]
rs56806297	1.00[EUR][1000 genomes]
rs57543960	0.81[AFR][1000 genomes]
rs7743944	0.80[ASW][hapmap];0.81[LWK][hapmap];0.89[MKK][hapmap]
rs9484753	1.00[EUR][1000 genomes]
rs9484756	1.00[EUR][1000 genomes]
rs9496615	1.00[EUR][1000 genomes]
rs9496649	1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];1.00[EUR][1000 genomes]
rs9496650	1.00[GIH][hapmap];1.00[EUR][1000 genomes]

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143772600-143832000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:143773200-143827000	Weak transcription	Brain Germinal Matrix	brain
3	chr6:143773400-143832000	Weak transcription	Fetal Brain Male	brain
4	chr6:143781000-143832000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr6:143790200-143831600	Weak transcription	Esophagus	oesophagus
6	chr6:143790200-143831600	Weak transcription	Gastric	stomach
7	chr6:143795200-143827400	Weak transcription	Aorta	Aorta
8	chr6:143795800-143831800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr6:143797000-143826600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr6:143797600-143831000	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr6:143799000-143827000	Weak transcription	Brain Cingulate Gyrus	brain
12	chr6:143800800-143831000	Weak transcription	Colon Smooth Muscle	Colon
13	chr6:143805200-143827800	Weak transcription	Fetal Heart	heart
14	chr6:143811400-143832000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr6:143811800-143829400	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr6:143812000-143827400	Weak transcription	Pancreas	Pancrea
17	chr6:143812200-143831600	Weak transcription	Right Ventricle	heart
18	chr6:143812400-143826800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr6:143812400-143829600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr6:143812400-143832200	Weak transcription	Spleen	Spleen
21	chr6:143812600-143831800	Weak transcription	NHEK	skin
22	chr6:143812600-143832000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr6:143813000-143826600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr6:143813400-143828400	Strong transcription	Duodenum Mucosa	Duodenum
25	chr6:143813400-143829600	Strong transcription	Fetal Intestine Large	intestine
26	chr6:143813800-143828400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr6:143814200-143825600	Strong transcription	Fetal Muscle Trunk	muscle
28	chr6:143814200-143828200	Strong transcription	HSMM	muscle
29	chr6:143814200-143828800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr6:143814200-143829600	Strong transcription	K562	blood
31	chr6:143814400-143825600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
32	chr6:143814400-143830200	Strong transcription	Primary monocytes fromperipheralblood	blood
33	chr6:143814600-143828200	Strong transcription	HepG2	liver
34	chr6:143814600-143828600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr6:143814600-143831000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr6:143814800-143827200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr6:143814800-143828200	Strong transcription	Left Ventricle	heart
38	chr6:143814800-143828200	Strong transcription	NHLF	lung
39	chr6:143814800-143828400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr6:143814800-143828400	Strong transcription	Adipose Nuclei	Adipose
41	chr6:143814800-143829000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr6:143814800-143829200	Strong transcription	Rectal Mucosa Donor 29	rectum
43	chr6:143814800-143829400	Strong transcription	HUES64 Cell Line	embryonic stem cell
44	chr6:143814800-143831400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr6:143815000-143826000	Strong transcription	Duodenum Smooth Muscle	Duodenum
46	chr6:143815000-143828400	Strong transcription	HUES6 Cell Line	embryonic stem cell
47	chr6:143815000-143829000	Strong transcription	Liver	Liver
48	chr6:143815200-143825600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr6:143815200-143828400	Weak transcription	Primary B cells from peripheral blood	blood
50	chr6:143815200-143830200	Weak transcription	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links