Variant report

Variant	rs9484756
Chromosome Location	chr6:143828720-143828721
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143825152..143826729-chr6:143827680..143829735,2	MCF-7	breast:
2	chr6:143827995..143830222-chr6:144165832..144168637,2	K562	blood:
3	chr6:143828004..143830607-chr6:143830758..143832524,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000229036	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs35220041	1.00[EUR][1000 genomes]
rs56806297	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9484753	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9496615	1.00[EUR][1000 genomes]
rs9496648	1.00[EUR][1000 genomes]
rs9496649	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9496650	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143772600-143832000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:143773400-143832000	Weak transcription	Fetal Brain Male	brain
3	chr6:143781000-143832000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr6:143790200-143831600	Weak transcription	Esophagus	oesophagus
5	chr6:143790200-143831600	Weak transcription	Gastric	stomach
6	chr6:143795800-143831800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr6:143797600-143831000	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr6:143800800-143831000	Weak transcription	Colon Smooth Muscle	Colon
9	chr6:143811400-143832000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:143811800-143829400	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr6:143812200-143831600	Weak transcription	Right Ventricle	heart
12	chr6:143812400-143829600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr6:143812400-143832200	Weak transcription	Spleen	Spleen
14	chr6:143812600-143831800	Weak transcription	NHEK	skin
15	chr6:143812600-143832000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr6:143813400-143829600	Strong transcription	Fetal Intestine Large	intestine
17	chr6:143814200-143828800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:143814200-143829600	Strong transcription	K562	blood
19	chr6:143814400-143830200	Strong transcription	Primary monocytes fromperipheralblood	blood
20	chr6:143814600-143831000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr6:143814800-143829000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr6:143814800-143829200	Strong transcription	Rectal Mucosa Donor 29	rectum
23	chr6:143814800-143829400	Strong transcription	HUES64 Cell Line	embryonic stem cell
24	chr6:143814800-143831400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr6:143815000-143829000	Strong transcription	Liver	Liver
26	chr6:143815200-143830200	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr6:143815200-143830800	Strong transcription	Placenta	Placenta
28	chr6:143815600-143831800	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr6:143815800-143830200	Weak transcription	Hela-S3	cervix
30	chr6:143815800-143832200	Weak transcription	Small Intestine	intestine
31	chr6:143816600-143829000	Strong transcription	Fetal Muscle Leg	muscle
32	chr6:143817000-143830400	Weak transcription	Stomach Mucosa	stomach
33	chr6:143817400-143831000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr6:143817800-143832200	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr6:143819000-143831800	Weak transcription	Brain Angular Gyrus	brain
36	chr6:143819200-143832000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr6:143819800-143831800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr6:143820000-143831000	Weak transcription	Primary T helper cells fromperipheralblood	blood
39	chr6:143820000-143831800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr6:143820000-143832000	Weak transcription	Thymus	Thymus
41	chr6:143820200-143830600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr6:143820200-143831600	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr6:143820200-143831800	Weak transcription	Primary T cells from cord blood	blood
44	chr6:143820200-143831800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
45	chr6:143820400-143832000	Weak transcription	Fetal Thymus	thymus
46	chr6:143821200-143831200	Weak transcription	A549	lung
47	chr6:143821400-143831800	Weak transcription	Fetal Kidney	kidney
48	chr6:143821600-143831600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr6:143821800-143831200	Weak transcription	Brain Anterior Caudate	brain
50	chr6:143821800-143831800	Weak transcription	NH-A	brain

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