Variant report

Variant	rs57543960
Chromosome Location	chr6:143831761-143831762
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:143830223..143833460-chr6:143856589..143859655,5	MCF-7	breast:
2	chr6:143381342..143383522-chr6:143831139..143832827,2	K562	blood:
3	chr6:143828004..143830607-chr6:143830758..143832524,2	MCF-7	breast:
4	chr6:143770816..143772927-chr6:143831000..143833550,2	MCF-7	breast:
5	chr6:143821189..143823852-chr6:143831025..143833660,2	MCF-7	breast:
6	chr6:143829496..143838775-chr6:143854591..143861568,17	MCF-7	breast:
7	chr6:143830620..143833385-chr6:144127423..144130418,2	K562	blood:
8	chr6:143769666..143773987-chr6:143831101..143834872,5	MCF-7	breast:
9	chr6:143770206..143773921-chr6:143828795..143834716,12	K562	blood:
10	chr6:143830342..143833743-chr6:144326901..144329456,3	K562	blood:
11	chr6:143381314..143382842-chr6:143831327..143834058,3	K562	blood:
12	chr6:143770206..143776731-chr6:143830754..143834661,9	K562	blood:

No data

Variant related genes	Relation type
ENSG00000001036	Chromatin interaction
ENSG00000118495	Chromatin interaction
ENSG00000146416	Chromatin interaction
ENSG00000112419	Chromatin interaction
ENSG00000034693	Chromatin interaction
ENSG00000257065	Chromatin interaction
ENSG00000189007	Chromatin interaction
ENSG00000223203	Chromatin interaction

rs_ID	r²[population]
rs10452657	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10484801	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17072720	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17072725	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs57854102	0.84[AFR][1000 genomes]
rs61175683	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7743944	0.88[AFR][1000 genomes]
rs9496648	0.81[AFR][1000 genomes]

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143772600-143832000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:143773400-143832000	Weak transcription	Fetal Brain Male	brain
3	chr6:143781000-143832000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr6:143795800-143831800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr6:143811400-143832000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:143812400-143832200	Weak transcription	Spleen	Spleen
7	chr6:143812600-143831800	Weak transcription	NHEK	skin
8	chr6:143812600-143832000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:143815600-143831800	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr6:143815800-143832200	Weak transcription	Small Intestine	intestine
11	chr6:143817800-143832200	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr6:143819000-143831800	Weak transcription	Brain Angular Gyrus	brain
13	chr6:143819200-143832000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr6:143819800-143831800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr6:143820000-143831800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr6:143820000-143832000	Weak transcription	Thymus	Thymus
17	chr6:143820200-143831800	Weak transcription	Primary T cells from cord blood	blood
18	chr6:143820200-143831800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr6:143820400-143832000	Weak transcription	Fetal Thymus	thymus
20	chr6:143821400-143831800	Weak transcription	Fetal Kidney	kidney
21	chr6:143821800-143831800	Weak transcription	NH-A	brain
22	chr6:143821800-143832000	Weak transcription	Primary B cells from cord blood	blood
23	chr6:143822000-143831800	Weak transcription	Psoas Muscle	Psoas
24	chr6:143825400-143832000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr6:143827000-143831800	Weak transcription	Fetal Stomach	stomach
26	chr6:143827000-143832000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr6:143827400-143831800	Weak transcription	Brain Hippocampus Middle	brain
28	chr6:143827600-143832000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr6:143828200-143831800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr6:143828200-143831800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr6:143828200-143831800	Weak transcription	Brain Cingulate Gyrus	brain
32	chr6:143828200-143831800	Weak transcription	Osteobl	bone
33	chr6:143828200-143832000	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr6:143828400-143831800	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr6:143828400-143831800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr6:143828400-143832000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr6:143828400-143832000	Weak transcription	Aorta	Aorta
38	chr6:143828600-143831800	Weak transcription	Primary neutrophils fromperipheralblood	blood
39	chr6:143828800-143831800	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr6:143828800-143831800	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr6:143828800-143831800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr6:143828800-143831800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr6:143828800-143832000	Weak transcription	Brain Germinal Matrix	brain
44	chr6:143829000-143831800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr6:143829000-143831800	Weak transcription	Fetal Lung	lung
46	chr6:143829400-143831800	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr6:143829600-143832000	Weak transcription	Primary B cells from peripheral blood	blood
48	chr6:143829800-143831800	Weak transcription	HSMM	muscle
49	chr6:143829800-143832000	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr6:143830000-143831800	Weak transcription	Primary hematopoietic stem cells	blood

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