Variant report

Variant	rs61196657
Chromosome Location	chr7:33256575-33256576
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11975252	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11976502	1.00[EUR][1000 genomes]
rs17170166	1.00[EUR][1000 genomes]
rs17170179	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55725343	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs56271710	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs57445939	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs58172854	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58830707	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6957562	1.00[EUR][1000 genomes]
rs6970824	0.83[AMR][1000 genomes]
rs73687329	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73687352	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73687358	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73687359	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73687362	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73688082	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73688083	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73688090	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73688094	0.89[AFR][1000 genomes]
rs73688907	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73689894	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029220	chr7:32921484-33262190	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
2	nsv830943	chr7:33167106-33352759	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv606610	chr7:33218763-33486316	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1016416	chr7:33241443-33559477	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33249400-33257200	Weak transcription	Fetal Brain Male	brain
2	chr7:33250600-33260400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:33251400-33265400	Weak transcription	Gastric	stomach
4	chr7:33252000-33262000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr7:33252400-33261600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr7:33252400-33263200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr7:33252800-33266400	Weak transcription	Left Ventricle	heart
8	chr7:33253600-33257200	Weak transcription	Stomach Smooth Muscle	stomach
9	chr7:33253600-33263400	Weak transcription	Primary T cells from cord blood	blood
10	chr7:33253800-33262000	Weak transcription	Aorta	Aorta
11	chr7:33254000-33257200	Weak transcription	Fetal Stomach	stomach
12	chr7:33254000-33260600	Weak transcription	Pancreas	Pancrea
13	chr7:33254000-33262000	Weak transcription	Ovary	ovary
14	chr7:33254400-33257200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr7:33254800-33258400	Enhancers	HepG2	liver
16	chr7:33256400-33257200	Weak transcription	Rectal Smooth Muscle	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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