Variant report

Variant	rs73688094
Chromosome Location	chr7:33283895-33283896
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs55725343	0.94[AFR][1000 genomes]
rs56271710	0.92[AFR][1000 genomes]
rs57445939	0.92[AFR][1000 genomes]
rs58830707	0.92[AFR][1000 genomes]
rs61196657	0.89[AFR][1000 genomes]
rs73687329	0.82[AFR][1000 genomes]
rs73687352	0.92[AFR][1000 genomes]
rs73687358	0.92[AFR][1000 genomes]
rs73687359	0.89[AFR][1000 genomes]
rs73687362	0.87[AFR][1000 genomes]
rs73688082	0.94[AFR][1000 genomes]
rs73688083	0.94[AFR][1000 genomes]
rs73688090	0.94[AFR][1000 genomes]
rs73688907	0.92[AFR][1000 genomes]
rs73690079	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73690084	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830943	chr7:33167106-33352759	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
2	nsv606610	chr7:33218763-33486316	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1016416	chr7:33241443-33559477	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv916660	chr7:33272493-33506384	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33283400-33284400	Weak transcription	Brain Angular Gyrus	brain
2	chr7:33283400-33290800	Weak transcription	Fetal Kidney	kidney
3	chr7:33283800-33284200	Enhancers	Fetal Lung	lung
4	chr7:33283800-33285200	Enhancers	HepG2	liver
5	chr7:33283800-33316000	Weak transcription	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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