Variant report

Variant	rs73688090
Chromosome Location	chr7:33273762-33273763
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs55725343	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56271710	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57445939	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58830707	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61196657	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6970824	1.00[AMR][1000 genomes]
rs73687329	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73687352	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73687358	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73687359	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73687362	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73688082	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73688083	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73688094	0.94[AFR][1000 genomes]
rs73688907	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830943	chr7:33167106-33352759	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
2	nsv606610	chr7:33218763-33486316	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1016416	chr7:33241443-33559477	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv916660	chr7:33272493-33506384	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33272600-33276800	Weak transcription	Brain Angular Gyrus	brain
2	chr7:33272800-33277000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr7:33273200-33273800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr7:33273200-33273800	Active TSS	Pancreatic Islets	Pancreatic Islet
5	chr7:33273400-33273800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr7:33273400-33273800	Active TSS	Duodenum Smooth Muscle	Duodenum
7	chr7:33273400-33273800	Enhancers	Fetal Lung	lung
8	chr7:33273400-33273800	Enhancers	Left Ventricle	heart
9	chr7:33273600-33273800	Flanking Active TSS	Stomach Smooth Muscle	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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