Variant report

Variant	rs61211799
Chromosome Location	chr6:11434025-11434026
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:11433709..11436638-chr6:11494109..11496934,3	MCF-7	breast:
2	chr6:11340393..11342489-chr6:11432505..11435028,2	MCF-7	breast:
3	chr6:11171902..11174211-chr6:11431419..11435176,3	MCF-7	breast:
4	chr6:11230313..11233018-chr6:11433520..11435084,2	MCF-7	breast:
5	chr6:11413490..11417171-chr6:11433636..11437714,3	MCF-7	breast:
6	chr6:11388708..11391347-chr6:11433045..11435258,2	MCF-7	breast:
7	chr6:11229128..11232149-chr6:11433876..11436826,3	MCF-7	breast:
8	chr6:11423621..11427169-chr6:11433589..11436531,3	MCF-7	breast:
9	chr6:11391901..11394391-chr6:11432829..11435706,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000247925	Chromatin interaction
ENSG00000111859	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs60450325	1.00[AMR][1000 genomes]
rs61570480	1.00[AMR][1000 genomes]
rs61679516	1.00[AMR][1000 genomes]
rs73721743	1.00[AMR][1000 genomes]
rs73721769	1.00[AMR][1000 genomes]
rs73722952	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv432848	chr6:11371614-11560114	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11423400-11434200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr6:11423600-11435200	Enhancers	HepG2	liver
3	chr6:11423800-11435600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:11425600-11436200	Enhancers	Adipose Nuclei	Adipose
5	chr6:11428000-11434800	Weak transcription	Psoas Muscle	Psoas
6	chr6:11428000-11438000	Weak transcription	Esophagus	oesophagus
7	chr6:11428200-11434400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr6:11428600-11434600	Weak transcription	Pancreas	Pancrea
9	chr6:11429400-11434600	Weak transcription	Fetal Lung	lung
10	chr6:11429400-11434800	Weak transcription	Right Atrium	heart
11	chr6:11429400-11434800	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr6:11430000-11435200	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr6:11430000-11435800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr6:11430200-11434400	Weak transcription	Small Intestine	intestine
15	chr6:11430600-11434600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr6:11430800-11435000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr6:11431000-11439200	Weak transcription	Primary B cells from cord blood	blood
18	chr6:11431600-11435400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr6:11431800-11435200	Enhancers	Hela-S3	cervix
20	chr6:11431800-11435600	Enhancers	HSMM	muscle
21	chr6:11431800-11435600	Enhancers	NHDF-Ad	bronchial
22	chr6:11432000-11435400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr6:11432000-11436000	Weak transcription	Lung	lung
24	chr6:11432200-11434200	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr6:11432200-11435600	Enhancers	HMEC	breast
26	chr6:11432400-11435400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr6:11432400-11435400	Enhancers	NHEK	skin
28	chr6:11432600-11434200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr6:11432600-11434200	Weak transcription	Placenta	Placenta
30	chr6:11432600-11434600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr6:11432600-11438000	Weak transcription	Left Ventricle	heart
32	chr6:11432800-11434600	Enhancers	HUVEC	blood vessel
33	chr6:11432800-11434800	Enhancers	Rectal Mucosa Donor 29	rectum
34	chr6:11432800-11435600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr6:11432800-11435800	Enhancers	Muscle Satellite Cultured Cells	--
36	chr6:11432800-11435800	Enhancers	Pancreatic Islets	Pancreatic Islet
37	chr6:11433000-11434200	Enhancers	Rectal Mucosa Donor 31	rectum
38	chr6:11433000-11434400	Enhancers	Brain Anterior Caudate	brain
39	chr6:11433000-11434400	Enhancers	Skeletal Muscle Male	skeletal muscle
40	chr6:11433200-11434400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr6:11433200-11434800	Weak transcription	Aorta	Aorta
42	chr6:11433400-11435600	Enhancers	Duodenum Smooth Muscle	Duodenum
43	chr6:11433400-11435800	Enhancers	Fetal Intestine Small	intestine
44	chr6:11433600-11434400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr6:11433600-11434400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr6:11433600-11435400	Enhancers	Fetal Kidney	kidney
47	chr6:11433600-11436400	Enhancers	Duodenum Mucosa	Duodenum
48	chr6:11433800-11434200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr6:11433800-11434200	Enhancers	A549	lung
50	chr6:11433800-11434600	Weak transcription	Stomach Mucosa	stomach

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