Variant report

Variant	rs73722952
Chromosome Location	chr6:11394424-11394425
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11229608..11234180-chr6:11390847..11394778,6	MCF-7	breast:
2	chr6:11389440..11392431-chr6:11393739..11396017,2	K562	blood:
3	chr6:11394123..11395903-chr6:11413687..11415867,2	MCF-7	breast:
4	chr6:11387321..11394874-chr6:11409302..11416244,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000111859	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs60450325	1.00[AMR][1000 genomes]
rs61211799	1.00[AMR][1000 genomes]
rs61570480	1.00[AMR][1000 genomes]
rs73721743	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv432848	chr6:11371614-11560114	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11389200-11394800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr6:11389400-11394800	Enhancers	HUVEC	blood vessel
3	chr6:11392400-11394800	Enhancers	Placenta	Placenta
4	chr6:11392400-11395000	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr6:11392400-11396000	Enhancers	Placenta Amnion	Placenta Amnion
6	chr6:11392600-11395200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr6:11392800-11394800	Enhancers	K562	blood
8	chr6:11393000-11394800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:11393000-11394800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr6:11393000-11394800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr6:11393000-11394800	Enhancers	Fetal Kidney	kidney
12	chr6:11393000-11394800	Enhancers	NHEK	skin
13	chr6:11393000-11395000	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr6:11393000-11396000	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr6:11393200-11394800	Enhancers	Primary B cells from cord blood	blood
16	chr6:11393200-11395000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr6:11393200-11395200	Enhancers	Primary B cells from peripheral blood	blood
18	chr6:11393400-11394800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr6:11393400-11394800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr6:11393400-11394800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr6:11393400-11395000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr6:11393400-11395000	Enhancers	HMEC	breast
23	chr6:11393400-11395000	Enhancers	HSMM	muscle
24	chr6:11393400-11395000	Enhancers	NHDF-Ad	bronchial
25	chr6:11393600-11394800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr6:11393600-11394800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr6:11393600-11394800	Enhancers	Primary neutrophils fromperipheralblood	blood
28	chr6:11393600-11395000	Enhancers	A549	lung
29	chr6:11393600-11395000	Enhancers	Monocytes-CD14+_RO01746	blood
30	chr6:11393600-11398000	Weak transcription	Lung	lung
31	chr6:11393600-11398600	Weak transcription	Adipose Nuclei	Adipose
32	chr6:11393800-11394800	Flanking Active TSS	NH-A	brain
33	chr6:11393800-11395000	Enhancers	Muscle Satellite Cultured Cells	--
34	chr6:11393800-11398000	Weak transcription	Liver	Liver
35	chr6:11394000-11394800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr6:11394000-11394800	Enhancers	Primary hematopoietic stem cells	blood
37	chr6:11394000-11395000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr6:11394000-11397600	Weak transcription	Fetal Intestine Small	intestine
39	chr6:11394000-11398000	Enhancers	HepG2	liver
40	chr6:11394000-11405600	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr6:11394200-11398000	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr6:11394200-11398000	Weak transcription	Spleen	Spleen
43	chr6:11394200-11398800	Weak transcription	Fetal Lung	lung
44	chr6:11394400-11394800	Enhancers	GM12878-XiMat	blood
45	chr6:11394400-11395000	Enhancers	Osteobl	bone
46	chr6:11394400-11395200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr6:11394400-11395200	Enhancers	HSMMtube	muscle
48	chr6:11394400-11397400	Weak transcription	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links