Variant report

Variant	rs73721743
Chromosome Location	chr6:11494343-11494344
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11433709..11436638-chr6:11494109..11496934,3	MCF-7	breast:
2	chr6:11230707..11237186-chr6:11493072..11498269,11	MCF-7	breast:

Variant related genes	Relation type
ENSG00000111859	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs60450325	1.00[AMR][1000 genomes]
rs61211799	1.00[AMR][1000 genomes]
rs61570480	1.00[AMR][1000 genomes]
rs61679516	1.00[AMR][1000 genomes]
rs73721769	1.00[AMR][1000 genomes]
rs73721780	1.00[AMR][1000 genomes]
rs73721781	1.00[AMR][1000 genomes]
rs73721784	1.00[AMR][1000 genomes]
rs73722952	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv432848	chr6:11371614-11560114	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11483800-11495000	Weak transcription	Pancreas	Pancrea
2	chr6:11486800-11496000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr6:11486800-11496800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr6:11487000-11495000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:11487400-11495800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr6:11487400-11495800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr6:11491800-11495800	Weak transcription	Fetal Kidney	kidney
8	chr6:11491800-11497200	Enhancers	Primary B cells from peripheral blood	blood
9	chr6:11492000-11496200	Enhancers	Primary B cells from cord blood	blood
10	chr6:11492000-11498200	Enhancers	A549	lung
11	chr6:11492200-11497400	Enhancers	HepG2	liver
12	chr6:11492800-11496000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:11493000-11494600	Weak transcription	Lung	lung
14	chr6:11493000-11495000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr6:11493000-11499800	Weak transcription	NH-A	brain
16	chr6:11493200-11496000	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr6:11493400-11494800	Weak transcription	Spleen	Spleen
18	chr6:11493400-11495000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr6:11493400-11495000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr6:11493400-11496200	Weak transcription	Osteobl	bone
21	chr6:11493400-11497600	Enhancers	Placenta Amnion	Placenta Amnion
22	chr6:11493400-11498200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr6:11493600-11494800	Weak transcription	Fetal Stomach	stomach
24	chr6:11493600-11495000	Weak transcription	Placenta	Placenta
25	chr6:11493600-11495800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr6:11493600-11496400	Weak transcription	Primary monocytes fromperipheralblood	blood
27	chr6:11493600-11496800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr6:11493800-11494600	Enhancers	GM12878-XiMat	blood
29	chr6:11493800-11495000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr6:11494000-11494400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr6:11494200-11496400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr6:11494200-11498200	Enhancers	Breast Myoepithelial Primary Cells	Breast

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