Variant report

Variant	rs61238584
Chromosome Location	chr3:43143668-43143669
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:43142624..43144798-chr3:43145061..43147327,2	K562	blood:
2	chr3:43142246..43143905-chr3:43146205..43148542,2	MCF-7	breast:
3	chr3:43142877..43144861-chr3:43146080..43147638,2	K562	blood:

Variant related genes	Relation type
ENSG00000144647	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs55913192	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72869073	1.00[EUR][1000 genomes]
rs73832430	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460522	chr3:42967597-43175207	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv590149	chr3:42967597-43175207	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv834672	chr3:43132722-43306272	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43119800-43143800	Weak transcription	Fetal Heart	heart
2	chr3:43122400-43145800	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr3:43122600-43145200	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr3:43122800-43145600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr3:43123000-43144400	Weak transcription	Fetal Intestine Large	intestine
6	chr3:43123000-43146400	Weak transcription	Duodenum Mucosa	Duodenum
7	chr3:43123000-43146600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr3:43123200-43144400	Weak transcription	Spleen	Spleen
9	chr3:43123200-43145000	Weak transcription	Adipose Nuclei	Adipose
10	chr3:43123400-43146400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr3:43123600-43146600	Weak transcription	Fetal Intestine Small	intestine
12	chr3:43124200-43145000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr3:43124400-43144200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr3:43124400-43146000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr3:43124400-43146600	Weak transcription	Aorta	Aorta
16	chr3:43124600-43144800	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr3:43124600-43146800	Weak transcription	Primary hematopoietic stem cells	blood
18	chr3:43127000-43144400	Weak transcription	Dnd41	blood
19	chr3:43129200-43144000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr3:43131600-43145600	Weak transcription	Primary T cells from cord blood	blood
21	chr3:43132600-43146000	Weak transcription	Fetal Lung	lung
22	chr3:43132800-43144000	Weak transcription	Stomach Mucosa	stomach
23	chr3:43135000-43145600	Weak transcription	HepG2	liver
24	chr3:43136200-43146000	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr3:43136600-43144800	Weak transcription	Fetal Brain Female	brain
26	chr3:43136800-43144200	Weak transcription	Stomach Smooth Muscle	stomach
27	chr3:43136800-43144400	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr3:43136800-43146600	Weak transcription	Esophagus	oesophagus
29	chr3:43137000-43144800	Weak transcription	Brain Cingulate Gyrus	brain
30	chr3:43137000-43145600	Weak transcription	Brain Angular Gyrus	brain
31	chr3:43137000-43145800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr3:43137000-43145800	Weak transcription	Brain Hippocampus Middle	brain
33	chr3:43137400-43144400	Weak transcription	Psoas Muscle	Psoas
34	chr3:43137400-43144800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr3:43137600-43144400	Weak transcription	Brain Substantia Nigra	brain
36	chr3:43137600-43144400	Weak transcription	Right Ventricle	heart
37	chr3:43138800-43144200	Weak transcription	Fetal Thymus	thymus
38	chr3:43138800-43146200	Weak transcription	HSMMtube	muscle
39	chr3:43139200-43144200	Weak transcription	K562	blood
40	chr3:43139600-43144400	Weak transcription	Fetal Muscle Trunk	muscle
41	chr3:43140000-43146200	Weak transcription	Liver	Liver
42	chr3:43140400-43145800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr3:43140600-43144400	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr3:43140800-43144400	Weak transcription	Gastric	stomach
45	chr3:43141200-43145000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr3:43142800-43144800	Weak transcription	Ovary	ovary
47	chr3:43143200-43146200	Enhancers	Fetal Muscle Leg	muscle
48	chr3:43143200-43146600	Enhancers	Placenta	Placenta
49	chr3:43143400-43146600	Enhancers	Left Ventricle	heart
50	chr3:43143600-43143800	Enhancers	Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links