Variant report

Variant	rs72869073
Chromosome Location	chr3:43061405-43061406
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:43060384..43063031-chr3:43093535..43095957,2	K562	blood:
2	chr3:43059886..43061659-chr3:43065331..43067767,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs55913192	1.00[EUR][1000 genomes]
rs61238584	1.00[EUR][1000 genomes]
rs73832430	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460522	chr3:42967597-43175207	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv590149	chr3:42967597-43175207	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv460523	chr3:43025986-43063406	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv590150	chr3:43025986-43063406	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv432417	chr3:43045796-43098296	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43053600-43073200	Weak transcription	Right Atrium	heart
2	chr3:43054600-43061600	Weak transcription	Stomach Smooth Muscle	stomach
3	chr3:43059400-43062000	Weak transcription	Esophagus	oesophagus
4	chr3:43059600-43074400	Weak transcription	Lung	lung
5	chr3:43059600-43084600	Weak transcription	Pancreas	Pancrea
6	chr3:43059800-43061800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr3:43059800-43062000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr3:43059800-43062000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr3:43059800-43062000	Enhancers	Fetal Intestine Small	intestine
10	chr3:43059800-43063400	Enhancers	Fetal Intestine Large	intestine
11	chr3:43059800-43064200	Enhancers	Fetal Brain Male	brain
12	chr3:43059800-43064800	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr3:43059800-43065200	Enhancers	Primary T killer memory cells from peripheral blood	blood
14	chr3:43060200-43061600	Enhancers	Colon Smooth Muscle	Colon
15	chr3:43060200-43062000	Enhancers	Fetal Stomach	stomach
16	chr3:43060200-43062400	Enhancers	Adipose Nuclei	Adipose
17	chr3:43060200-43065200	Enhancers	Fetal Thymus	thymus
18	chr3:43060200-43065400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr3:43060200-43065400	Enhancers	Thymus	Thymus
20	chr3:43060400-43061600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr3:43060400-43061800	Enhancers	Brain Inferior Temporal Lobe	brain
22	chr3:43060400-43062000	Enhancers	NHDF-Ad	bronchial
23	chr3:43060600-43061600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr3:43060600-43061600	Enhancers	Duodenum Smooth Muscle	Duodenum
25	chr3:43060600-43061800	Enhancers	Placenta	Placenta
26	chr3:43060600-43064600	Enhancers	Primary T helper naive cells from peripheral blood	blood
27	chr3:43060600-43064800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
28	chr3:43060800-43063800	Weak transcription	Brain Substantia Nigra	brain
29	chr3:43060800-43065400	Enhancers	Primary T cells fromperipheralblood	blood
30	chr3:43060800-43069600	Weak transcription	Stomach Mucosa	stomach
31	chr3:43061000-43061600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr3:43061000-43062200	Weak transcription	Spleen	Spleen
33	chr3:43061000-43065000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
34	chr3:43061000-43065400	Enhancers	Primary T helper cells fromperipheralblood	blood
35	chr3:43061000-43066200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr3:43061000-43072200	Weak transcription	Liver	Liver
37	chr3:43061000-43080200	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr3:43061200-43063600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
39	chr3:43061400-43064600	Enhancers	Primary T cells from cord blood	blood
40	chr3:43061400-43064600	Enhancers	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links