Variant report

Variant	rs73832430
Chromosome Location	chr3:43103212-43103213
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:43101835..43104302-chr3:43113340..43115119,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs55913192	1.00[EUR][1000 genomes]
rs61238584	1.00[EUR][1000 genomes]
rs72869073	1.00[EUR][1000 genomes]
rs73832423	0.94[AFR][1000 genomes]
rs73832424	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460522	chr3:42967597-43175207	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv590149	chr3:42967597-43175207	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43092800-43117800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr3:43093400-43120200	Weak transcription	Brain Cingulate Gyrus	brain
3	chr3:43094200-43104200	Weak transcription	Gastric	stomach
4	chr3:43094400-43114800	Weak transcription	Brain Anterior Caudate	brain
5	chr3:43095000-43114800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr3:43095800-43104400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr3:43096200-43121200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr3:43097200-43104600	Weak transcription	Brain Substantia Nigra	brain
9	chr3:43098800-43104200	Weak transcription	Ovary	ovary
10	chr3:43100200-43120200	Weak transcription	Brain Angular Gyrus	brain
11	chr3:43101000-43105000	Enhancers	Fetal Thymus	thymus
12	chr3:43101600-43121000	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr3:43101800-43105000	ZNF genes & repeats	Fetal Stomach	stomach
14	chr3:43102000-43104000	Weak transcription	Placenta	Placenta
15	chr3:43102000-43121000	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr3:43102400-43103400	ZNF genes & repeats	Liver	Liver
17	chr3:43102600-43103800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr3:43102600-43103800	Weak transcription	Thymus	Thymus
19	chr3:43102600-43104000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr3:43102800-43104000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr3:43102800-43104000	Weak transcription	Primary T cells from cord blood	blood
22	chr3:43102800-43118800	Weak transcription	Brain Hippocampus Middle	brain
23	chr3:43103000-43104200	Weak transcription	Fetal Muscle Leg	muscle
24	chr3:43103000-43120000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr3:43103200-43103400	Enhancers	Fetal Muscle Trunk	muscle
26	chr3:43103200-43103400	Genic enhancers	Stomach Smooth Muscle	stomach
27	chr3:43103200-43104400	Enhancers	Right Atrium	heart
28	chr3:43103200-43120600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links