Variant report

Variant	rs61247654
Chromosome Location	chr9:21533009-21533010
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs57966599	0.94[AFR][1000 genomes]
rs60100518	1.00[AFR][1000 genomes]
rs60154937	0.94[AFR][1000 genomes]
rs60587038	1.00[AFR][1000 genomes]
rs7037366	0.94[AFR][1000 genomes]
rs73422467	0.94[AFR][1000 genomes]
rs73422476	0.94[AFR][1000 genomes]
rs73422479	0.85[AFR][1000 genomes]
rs73422482	0.82[AFR][1000 genomes]
rs73422483	1.00[AFR][1000 genomes]
rs73422489	1.00[AFR][1000 genomes]
rs73422494	1.00[AFR][1000 genomes]
rs73422499	1.00[AFR][1000 genomes]
rs73424369	1.00[AFR][1000 genomes]
rs73424370	0.97[AFR][1000 genomes]
rs73424372	1.00[AFR][1000 genomes]
rs73424374	1.00[AFR][1000 genomes]
rs73424377	1.00[AFR][1000 genomes]
rs7866421	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892740	chr9:21471499-21551513	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA miRNA	110 gene(s)	inside rSNPs	diseases
2	nsv1031432	chr9:21472601-21608774	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	122 gene(s)	inside rSNPs	diseases
3	nsv540085	chr9:21472601-21608774	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	122 gene(s)	inside rSNPs	diseases
4	nsv892741	chr9:21517302-21551513	Genic enhancers Enhancers Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21507200-21551400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr9:21508000-21542000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr9:21516800-21542600	Weak transcription	Stomach Mucosa	stomach
4	chr9:21522600-21533200	Strong transcription	NH-A	brain
5	chr9:21525600-21534000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr9:21526400-21534800	Strong transcription	NHEK	skin
7	chr9:21526800-21534800	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr9:21527800-21536600	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr9:21528800-21533400	Weak transcription	Fetal Intestine Large	intestine
10	chr9:21528800-21535800	Weak transcription	Gastric	stomach
11	chr9:21528800-21542000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr9:21529000-21533200	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr9:21529000-21534800	Weak transcription	Esophagus	oesophagus
14	chr9:21529000-21551400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr9:21530200-21533600	Weak transcription	HSMM	muscle
16	chr9:21530800-21533200	Genic enhancers	Muscle Satellite Cultured Cells	--
17	chr9:21530800-21533400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr9:21530800-21535000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr9:21531000-21533600	Weak transcription	NHDF-Ad	bronchial
20	chr9:21531600-21542600	Weak transcription	Duodenum Mucosa	Duodenum
21	chr9:21531800-21533200	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr9:21531800-21533200	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr9:21532000-21533200	Strong transcription	HUVEC	blood vessel
24	chr9:21532200-21534000	Genic enhancers	HMEC	breast
25	chr9:21532200-21542800	Weak transcription	NHLF	lung
26	chr9:21532400-21534600	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr9:21532400-21542000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr9:21532600-21533400	Strong transcription	A549	lung
29	chr9:21532600-21533800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr9:21532800-21533200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr9:21532800-21533200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr9:21533000-21533200	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr9:21533000-21535000	Weak transcription	Hela-S3	cervix
34	chr9:21533000-21535000	Strong transcription	Osteobl	bone

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