Variant report

Variant	rs73422494
Chromosome Location	chr9:21524881-21524882
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr9:21524862-21525203	HUVEC	blood vessel:	n/a	n/a
2	FOSL1	chr9:21524822-21527232	HCT-116	colon:	n/a	n/a
3	JUND	chr9:21519231-21528507	HCT-116	colon:	n/a	n/a
4	RAD21	chr9:21520782-21525605	HCT-116	colon:	n/a	n/a
5	POLR2A	chr9:21519358-21529034	PANC-1	pancreas:	n/a	n/a
6	JUND	chr9:21517910-21528426	HCT-116	colon:	n/a	n/a
7	CBX3	chr9:21519763-21526025	HCT-116	colon:	n/a	n/a
8	EGR1	chr9:21523516-21524894	HCT-116	colon:	n/a	n/a
9	ELF1	chr9:21519892-21526918	HCT-116	colon:	n/a	n/a
10	SRF	chr9:21519933-21527253	HCT-116	colon:	n/a	n/a
11	POLR2A	chr9:21524875-21525927	HUVEC	blood vessel:	n/a	n/a
12	POLR2A	chr9:21515900-21530251	A549	lung:	n/a	n/a
13	CEBPB	chr9:21519283-21525730	HCT-116	colon:	n/a	n/a
14	SIN3AK20	chr9:21519421-21525976	HCT-116	colon:	n/a	n/a
15	MAX	chr9:21519858-21525954	HCT-116	colon:	n/a	n/a
16	POLR2A	chr9:21516566-21534519	HCT-116	colon:	n/a	n/a
17	POLR2A	chr9:21519394-21529027	HCT-116	colon:	n/a	n/a
18	SIN3AK20	chr9:21519728-21526072	HCT-116	colon:	n/a	n/a

Variant related genes	Relation type
ENSG00000264379	TF binding region

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs57966599	0.94[AFR][1000 genomes]
rs60100518	1.00[AFR][1000 genomes]
rs60154937	0.94[AFR][1000 genomes]
rs60587038	1.00[AFR][1000 genomes]
rs61247654	1.00[AFR][1000 genomes]
rs7037366	0.94[AFR][1000 genomes]
rs73422467	0.94[AFR][1000 genomes]
rs73422476	0.94[AFR][1000 genomes]
rs73422479	0.85[AFR][1000 genomes]
rs73422482	0.82[AFR][1000 genomes]
rs73422483	1.00[AFR][1000 genomes]
rs73422489	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73422499	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73424369	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73424370	0.97[AFR][1000 genomes]
rs73424372	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73424374	1.00[AFR][1000 genomes]
rs73424377	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7866421	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020232	chr9:21464962-21524999	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA miRNA	110 gene(s)	inside rSNPs	diseases
2	nsv892740	chr9:21471499-21551513	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA miRNA	110 gene(s)	inside rSNPs	diseases
3	nsv1031432	chr9:21472601-21608774	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	122 gene(s)	inside rSNPs	diseases
4	nsv540085	chr9:21472601-21608774	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	122 gene(s)	inside rSNPs	diseases
5	esv2757326	chr9:21499624-21526526	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region miRNA	105 gene(s)	inside rSNPs	diseases
6	esv2759680	chr9:21499624-21526526	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region miRNA	105 gene(s)	inside rSNPs	diseases
7	nsv892741	chr9:21517302-21551513	Genic enhancers Enhancers Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21466000-21527600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:21494800-21527600	Weak transcription	Gastric	stomach
3	chr9:21507200-21551400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr9:21507400-21527200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr9:21508000-21542000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr9:21508200-21527600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr9:21508200-21527600	Weak transcription	Fetal Intestine Small	intestine
8	chr9:21510400-21527600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr9:21512200-21526400	Weak transcription	Duodenum Mucosa	Duodenum
10	chr9:21512200-21526600	Weak transcription	HSMM	muscle
11	chr9:21512800-21527000	Weak transcription	NHLF	lung
12	chr9:21513000-21526600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr9:21514400-21527000	Weak transcription	Hela-S3	cervix
14	chr9:21516800-21542600	Weak transcription	Stomach Mucosa	stomach
15	chr9:21518200-21526400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr9:21519000-21525800	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr9:21520400-21526600	Weak transcription	HUVEC	blood vessel
18	chr9:21520400-21526800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr9:21520400-21527000	Weak transcription	NHDF-Ad	bronchial
20	chr9:21521400-21526400	Weak transcription	NHEK	skin
21	chr9:21521600-21525600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr9:21522600-21532600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr9:21522600-21533200	Strong transcription	NH-A	brain
24	chr9:21522800-21530000	ZNF genes & repeats	A549	lung
25	chr9:21523400-21526400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr9:21523400-21527400	Weak transcription	Fetal Intestine Large	intestine
27	chr9:21523600-21527600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr9:21524000-21527800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr9:21524400-21527600	Strong transcription	HMEC	breast
30	chr9:21524400-21532200	Strong transcription	Osteobl	bone
31	chr9:21524600-21526200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr9:21524800-21526400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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