Variant report

Variant	rs61262114
Chromosome Location	chr1:211083604-211083605
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs55747858	1.00[AMR][1000 genomes]
rs56044218	1.00[AMR][1000 genomes]
rs56378855	1.00[AMR][1000 genomes]
rs56998447	1.00[AMR][1000 genomes]
rs74156870	1.00[AMR][1000 genomes]
rs74156874	1.00[AMR][1000 genomes]
rs74156877	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832503	chr1:210948760-211103163	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv873154	chr1:211057697-211117197	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv549124	chr1:211069694-211088474	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211078800-211083800	Enhancers	HSMMtube	muscle
2	chr1:211080400-211085600	Enhancers	Liver	Liver
3	chr1:211080800-211083800	Enhancers	Brain Inferior Temporal Lobe	brain
4	chr1:211081200-211083800	Weak transcription	HSMM	muscle
5	chr1:211082800-211085200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr1:211082800-211091000	Weak transcription	Brain Anterior Caudate	brain
7	chr1:211083000-211084000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr1:211083000-211085200	Weak transcription	Brain Cingulate Gyrus	brain
9	chr1:211083000-211089600	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr1:211083000-211091000	Weak transcription	Brain Angular Gyrus	brain
11	chr1:211083000-211091000	Weak transcription	Brain Hippocampus Middle	brain
12	chr1:211083000-211091200	Weak transcription	Brain Substantia Nigra	brain
13	chr1:211083200-211088000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr1:211083600-211084000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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