Variant report

Variant	rs74156874
Chromosome Location	chr1:211198897-211198898
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs55747858	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56044218	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56378855	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56998447	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61262114	1.00[AMR][1000 genomes]
rs74156870	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74156876	0.90[AFR][1000 genomes]
rs74156877	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4410	chr1:211193724-211210571	Enhancers Weak transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211182800-211228600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:211192600-211199800	Weak transcription	Brain Substantia Nigra	brain
3	chr1:211192600-211209000	Weak transcription	HSMMtube	muscle
4	chr1:211194400-211209200	Weak transcription	HSMM	muscle
5	chr1:211198200-211199000	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr1:211198600-211199400	Enhancers	Brain Hippocampus Middle	brain
7	chr1:211198800-211199000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr1:211198800-211209600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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