Variant report

Variant	rs74156876
Chromosome Location	chr1:211210262-211210263
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs55747858	0.95[AFR][1000 genomes]
rs56044218	0.82[AFR][1000 genomes]
rs56378855	0.85[AFR][1000 genomes]
rs74156870	0.85[AFR][1000 genomes]
rs74156874	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4410	chr1:211193724-211210571	Enhancers Weak transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211182800-211228600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:211209000-211211200	Enhancers	HSMMtube	muscle
3	chr1:211209200-211211000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr1:211209200-211211000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr1:211209200-211211200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr1:211209200-211211200	Enhancers	Muscle Satellite Cultured Cells	--
7	chr1:211209200-211211200	Enhancers	NHDF-Ad	bronchial
8	chr1:211209400-211210800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr1:211209400-211211200	Enhancers	NH-A	brain
10	chr1:211209400-211211200	Enhancers	Osteobl	bone
11	chr1:211209600-211211200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr1:211209800-211210400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr1:211209800-211211000	Enhancers	Brain Anterior Caudate	brain
14	chr1:211209800-211211200	Enhancers	Hela-S3	cervix
15	chr1:211210000-211210400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr1:211210000-211210400	Flanking Active TSS	A549	lung
17	chr1:211210000-211210400	Flanking Active TSS	HSMM	muscle
18	chr1:211210000-211210400	Enhancers	NHEK	skin
19	chr1:211210000-211210600	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr1:211210000-211210600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr1:211210000-211211000	Enhancers	K562	blood
22	chr1:211210200-211210800	Enhancers	Brain Hippocampus Middle	brain
23	chr1:211210200-211210800	Enhancers	HMEC	breast
24	chr1:211210200-211211200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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