Variant report
| Variant | rs61273704 |
|---|---|
| Chromosome Location | chr10:25941132-25941133 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:2)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:2 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | CEBPB | chr10:25941048-25941204 | A549 | lung: | n/a | chr10:25941143-25941156 |
| 2 | JUN | chr10:25941117-25941237 | HepG2 | liver: | n/a | chr10:25941141-25941154 chr10:25941117-25941126 |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| GPN3P1 | TF binding region |
rSNPs within LD-proxies of this variant (count:9)
| rs_ID | r2[population] |
|---|---|
| rs11014670 | 1.00[ASN][1000 genomes] |
| rs61411057 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs71495478 | 0.85[ASN][1000 genomes] |
| rs74124224 | 1.00[AMR][1000 genomes] |
| rs74124225 | 1.00[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs74124240 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs74124264 | 1.00[AMR][1000 genomes] |
| rs74124265 | 1.00[AMR][1000 genomes] |
| rs74124266 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3349863 | chr10:25614571-25946379 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv1044482 | chr10:25889919-25977270 | Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
