Variant report
| Variant | rs74124224 |
|---|---|
| Chromosome Location | chr10:25927211-25927212 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000231422 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:7)
| rs_ID | r2[population] |
|---|---|
| rs61273704 | 1.00[AMR][1000 genomes] |
| rs61411057 | 1.00[AMR][1000 genomes] |
| rs74124225 | 1.00[AMR][1000 genomes] |
| rs74124240 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74124264 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74124265 | 1.00[AMR][1000 genomes] |
| rs74124266 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3349863 | chr10:25614571-25946379 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv1044482 | chr10:25889919-25977270 | Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
