Variant report

Variant	rs61296280
Chromosome Location	chr15:58305820-58305821
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs4646604	1.00[AFR][1000 genomes]
rs57771776	1.00[AFR][1000 genomes]
rs57880991	1.00[AFR][1000 genomes]
rs59092730	1.00[AFR][1000 genomes]
rs60481179	1.00[AFR][1000 genomes]
rs60870373	1.00[AFR][1000 genomes]
rs74017076	1.00[AFR][1000 genomes]
rs74017077	0.87[AFR][1000 genomes]
rs74017082	1.00[AFR][1000 genomes]
rs74017083	1.00[AFR][1000 genomes]
rs74017085	1.00[AFR][1000 genomes]
rs74017091	1.00[AFR][1000 genomes]
rs74017092	1.00[AFR][1000 genomes]
rs74017093	0.87[AFR][1000 genomes]
rs74017097	1.00[AFR][1000 genomes]
rs74017098	1.00[AFR][1000 genomes]
rs74017102	1.00[AFR][1000 genomes]
rs74018805	1.00[AFR][1000 genomes]
rs74018806	1.00[AFR][1000 genomes]
rs74018808	1.00[AFR][1000 genomes]
rs74018809	1.00[AFR][1000 genomes]
rs74018814	1.00[AFR][1000 genomes]
rs74018815	0.87[AFR][1000 genomes]
rs74018818	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038667	chr15:57933076-58481870	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv542400	chr15:57933076-58481870	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv833023	chr15:58161839-58340174	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv569593	chr15:58201698-58308650	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv904261	chr15:58258424-58347260	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58292400-58306000	Strong transcription	K562	blood
2	chr15:58298800-58308000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr15:58303000-58308200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr15:58305400-58307800	Weak transcription	Fetal Kidney	kidney
5	chr15:58305800-58306400	Enhancers	Fetal Thymus	thymus
6	chr15:58305800-58306400	Bivalent Enhancer	Thymus	Thymus

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