Variant report

Variant	rs74018815
Chromosome Location	chr15:58313099-58313100
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs4646604	0.87[AFR][1000 genomes]
rs57771776	0.87[AFR][1000 genomes]
rs57880991	0.87[AFR][1000 genomes]
rs59092730	0.87[AFR][1000 genomes]
rs60481179	0.87[AFR][1000 genomes]
rs60870373	0.87[AFR][1000 genomes]
rs61296280	0.87[AFR][1000 genomes]
rs74017076	0.87[AFR][1000 genomes]
rs74017082	0.87[AFR][1000 genomes]
rs74017083	0.87[AFR][1000 genomes]
rs74017085	0.87[AFR][1000 genomes]
rs74017091	0.87[AFR][1000 genomes]
rs74017092	0.87[AFR][1000 genomes]
rs74017097	0.87[AFR][1000 genomes]
rs74017098	0.87[AFR][1000 genomes]
rs74017102	0.87[AFR][1000 genomes]
rs74018805	0.87[AFR][1000 genomes]
rs74018806	0.87[AFR][1000 genomes]
rs74018808	0.87[AFR][1000 genomes]
rs74018809	0.87[AFR][1000 genomes]
rs74018814	0.87[AFR][1000 genomes]
rs74018818	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038667	chr15:57933076-58481870	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv542400	chr15:57933076-58481870	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv833023	chr15:58161839-58340174	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv904261	chr15:58258424-58347260	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58308400-58314200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr15:58312000-58313800	Weak transcription	K562	blood
3	chr15:58312600-58317600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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