Variant report

Variant	rs74017076
Chromosome Location	chr15:58240925-58240926
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs4646604	1.00[AFR][1000 genomes]
rs57771776	1.00[AFR][1000 genomes]
rs57880991	1.00[AFR][1000 genomes]
rs59092730	1.00[AFR][1000 genomes]
rs60481179	1.00[AFR][1000 genomes]
rs60870373	1.00[AFR][1000 genomes]
rs61296280	1.00[AFR][1000 genomes]
rs74017077	0.87[AFR][1000 genomes]
rs74017082	1.00[AFR][1000 genomes]
rs74017083	1.00[AFR][1000 genomes]
rs74017085	1.00[AFR][1000 genomes]
rs74017091	1.00[AFR][1000 genomes]
rs74017092	1.00[AFR][1000 genomes]
rs74017093	0.87[AFR][1000 genomes]
rs74017097	1.00[AFR][1000 genomes]
rs74017098	1.00[AFR][1000 genomes]
rs74017102	1.00[AFR][1000 genomes]
rs74018805	1.00[AFR][1000 genomes]
rs74018806	1.00[AFR][1000 genomes]
rs74018808	1.00[AFR][1000 genomes]
rs74018809	1.00[AFR][1000 genomes]
rs74018814	1.00[AFR][1000 genomes]
rs74018815	0.87[AFR][1000 genomes]
rs74018818	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038667	chr15:57933076-58481870	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv542400	chr15:57933076-58481870	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv833023	chr15:58161839-58340174	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv569593	chr15:58201698-58308650	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58234200-58242200	Weak transcription	Right Atrium	heart
2	chr15:58236000-58242200	Weak transcription	Fetal Kidney	kidney
3	chr15:58236400-58241000	Weak transcription	Fetal Muscle Leg	muscle
4	chr15:58240200-58252800	Weak transcription	Fetal Lung	lung
5	chr15:58240400-58247000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr15:58240600-58242800	Enhancers	Ovary	ovary

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links