Variant report

Variant	rs61311213
Chromosome Location	chr7:137872583-137872584
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1373675	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1373677	0.97[ASN][1000 genomes]
rs1552583	0.83[ASN][1000 genomes]
rs1973325	0.83[ASN][1000 genomes]
rs2440808	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2450848	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2451236	0.87[AMR][1000 genomes]
rs2718124	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2718126	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2718128	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73729501	1.00[ASN][1000 genomes]
rs7785037	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34048	chr7:137724092-138213119	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	esv3477523	chr7:137871944-137873581	Enhancers ZNF genes & repeats Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
3	esv3477524	chr7:137871944-137873581	Enhancers ZNF genes & repeats Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
4	esv3421217	chr7:137872348-137872761	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137869800-137873000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr7:137870400-137872800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:137871200-137872800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr7:137871200-137874000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
5	chr7:137871200-137874400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
6	chr7:137871400-137873400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
7	chr7:137871600-137873600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
8	chr7:137871600-137874400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
9	chr7:137871800-137872800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr7:137871800-137873600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
11	chr7:137871800-137874200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr7:137872000-137873200	Weak transcription	Brain Angular Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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