Variant report
Variant | rs6131711 |
---|---|
Chromosome Location | chr20:15776418-15776419 |
allele | A/C |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
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No data |
rs_ID | r2[population] |
---|---|
rs10460644 | 0.88[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs16996551 | 0.91[CEU][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs1810505 | 0.88[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs1997798 | 0.90[ASN][1000 genomes] |
rs2041422 | 0.87[CEU][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs2103709 | 0.91[CEU][hapmap] |
rs2109536 | 0.91[ASN][1000 genomes] |
rs2876413 | 0.88[CEU][hapmap] |
rs4292145 | 0.90[ASN][1000 genomes] |
rs6043538 | 0.84[CEU][hapmap] |
rs6105464 | 0.81[CEU][hapmap] |
rs6131708 | 0.93[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs6131709 | 0.92[CEU][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs6131710 | 0.92[CEU][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs6131712 | 0.91[CEU][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs6131714 | 0.87[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes] |
rs6131715 | 0.87[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes] |
rs6131716 | 0.87[CHB][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes] |
rs6131717 | 0.87[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes] |
rs6131718 | 0.87[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes] |
rs6131726 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs6135496 | 0.80[CEU][hapmap] |
rs6135498 | 0.87[CEU][hapmap] |
rs6135503 | 0.88[CEU][hapmap] |
rs6135517 | 0.84[CEU][hapmap];0.88[EUR][1000 genomes] |
rs6135524 | 0.95[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs6135525 | 1.00[CEU][hapmap];0.90[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs6135526 | 0.92[CEU][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs6135547 | 0.82[EUR][1000 genomes] |
rs6135550 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs6135551 | 0.92[CEU][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs6135555 | 0.81[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs6135556 | 0.81[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs6514612 | 0.88[CEU][hapmap] |
rs761262 | 0.86[CHB][hapmap];0.90[JPT][hapmap];0.92[ASN][1000 genomes] |
rs763660 | 0.87[CEU][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs8118724 | 0.92[CEU][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs979530 | 0.92[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv869328 | chr20:15325423-16213898 | Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
2 | nsv833928 | chr20:15619962-15780758 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
3 | nsv519883 | chr20:15738086-15817106 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
4 | nsv585643 | chr20:15759361-15796051 | Flanking Active TSS Enhancers Weak transcription Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
5 | nsv912793 | chr20:15760969-15807441 | Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
6 | nsv833929 | chr20:15765372-15977337 | Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
7 | esv1847965 | chr20:15766727-15807441 | Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
8 | nsv585644 | chr20:15766727-15807441 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr20:15770800-15780000 | Weak transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |
2 | chr20:15773600-15777600 | Enhancers | H9 Derived Neuron Cultured Cells | ES cell derived |
3 | chr20:15775000-15776800 | Enhancers | Brain Germinal Matrix | brain |
4 | chr20:15775200-15776800 | Enhancers | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
5 | chr20:15776400-15776800 | Enhancers | iPS-15b Cell Line | embryonic stem cell |