Variant report
Variant | rs6135503 |
---|---|
Chromosome Location | chr20:15757290-15757291 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
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No data |
rs_ID | r2[population] |
---|---|
rs10460644 | 0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs11699445 | 0.82[AMR][1000 genomes] |
rs16996551 | 0.96[CEU][hapmap];0.86[JPT][hapmap];0.86[EUR][1000 genomes] |
rs2041422 | 0.91[CEU][hapmap] |
rs2103709 | 0.87[CEU][hapmap];0.92[AMR][1000 genomes] |
rs2876413 | 0.92[CEU][hapmap];0.82[JPT][hapmap] |
rs4813196 | 0.82[CHB][hapmap];0.87[JPT][hapmap];0.87[YRI][hapmap];0.86[ASN][1000 genomes] |
rs4813197 | 0.80[ASN][1000 genomes] |
rs6034288 | 0.81[ASN][1000 genomes] |
rs6034289 | 0.83[CHB][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes] |
rs6043538 | 0.96[CEU][hapmap];0.88[YRI][hapmap];0.91[AFR][1000 genomes];0.93[EUR][1000 genomes] |
rs6043539 | 0.80[ASN][1000 genomes] |
rs6105464 | 0.82[CEU][hapmap] |
rs6131703 | 0.85[EUR][1000 genomes] |
rs6131708 | 0.85[EUR][1000 genomes] |
rs6131709 | 0.96[CEU][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes] |
rs6131710 | 0.96[CEU][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes] |
rs6131711 | 0.88[CEU][hapmap] |
rs6131712 | 0.96[CEU][hapmap];0.86[JPT][hapmap];0.83[EUR][1000 genomes] |
rs6131726 | 0.87[CEU][hapmap] |
rs6135496 | 0.87[AMR][1000 genomes] |
rs6135498 | 0.91[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.93[ASN][1000 genomes] |
rs6135507 | 0.80[ASN][1000 genomes] |
rs6135517 | 0.96[CEU][hapmap];0.86[JPT][hapmap];0.87[EUR][1000 genomes] |
rs6135524 | 0.83[EUR][1000 genomes] |
rs6135525 | 0.88[CEU][hapmap];0.80[EUR][1000 genomes] |
rs6135526 | 0.96[CEU][hapmap];0.83[EUR][1000 genomes] |
rs6135550 | 0.88[CEU][hapmap] |
rs6135551 | 0.96[CEU][hapmap];0.80[EUR][1000 genomes] |
rs6135555 | 0.81[EUR][1000 genomes] |
rs6135556 | 0.82[JPT][hapmap];0.81[EUR][1000 genomes] |
rs6514612 | 0.84[CEU][hapmap];0.81[EUR][1000 genomes] |
rs763660 | 0.91[CEU][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes] |
rs8118724 | 0.96[CEU][hapmap];0.80[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv869328 | chr20:15325423-16213898 | Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
2 | nsv833928 | chr20:15619962-15780758 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
3 | nsv912791 | chr20:15702037-15759361 | Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
4 | nsv458934 | chr20:15738086-15772582 | Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
5 | nsv585641 | chr20:15738086-15772582 | Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
6 | nsv585642 | chr20:15738086-15772876 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
7 | nsv519883 | chr20:15738086-15817106 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
8 | esv2762063 | chr20:15755244-15765167 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr20:15755200-15757600 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
2 | chr20:15755400-15757400 | Weak transcription | iPS-20b Cell Line | embryonic stem cell |
3 | chr20:15757200-15757800 | Enhancers | HUES48 Cell Line | embryonic stem cell |