Variant report
Variant | rs6034289 |
---|---|
Chromosome Location | chr20:15763785-15763786 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
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No data |
rs_ID | r2[population] |
---|---|
rs10460644 | 0.82[ASN][1000 genomes] |
rs12480313 | 0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs12624706 | 0.80[EUR][1000 genomes] |
rs13041254 | 0.95[CEU][hapmap];0.87[EUR][1000 genomes] |
rs1997798 | 0.84[EUR][1000 genomes] |
rs2109535 | 0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs2109536 | 0.84[EUR][1000 genomes] |
rs2327966 | 0.88[CEU][hapmap] |
rs33952091 | 0.87[EUR][1000 genomes] |
rs4292145 | 0.81[EUR][1000 genomes] |
rs4426588 | 0.81[EUR][1000 genomes] |
rs4813196 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs4813197 | 0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs6034288 | 0.95[CEU][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs6043529 | 0.90[CEU][hapmap] |
rs6043530 | 0.89[CEU][hapmap] |
rs6043539 | 0.95[CEU][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs6131706 | 0.95[CEU][hapmap];0.83[EUR][1000 genomes] |
rs6131714 | 0.81[CEU][hapmap];0.84[EUR][1000 genomes] |
rs6131715 | 0.81[CEU][hapmap];0.84[EUR][1000 genomes] |
rs6131716 | 0.81[CEU][hapmap];0.84[EUR][1000 genomes] |
rs6131717 | 0.81[CEU][hapmap];0.84[EUR][1000 genomes] |
rs6131718 | 0.81[CEU][hapmap];0.83[EUR][1000 genomes] |
rs6135498 | 0.86[CHB][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes] |
rs6135503 | 0.83[CHB][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes] |
rs6135506 | 0.95[CEU][hapmap];0.87[EUR][1000 genomes] |
rs6135507 | 0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs6135508 | 0.95[CEU][hapmap];0.87[EUR][1000 genomes] |
rs6135509 | 0.89[CEU][hapmap];0.87[EUR][1000 genomes] |
rs6135511 | 0.84[CEU][hapmap];0.81[EUR][1000 genomes] |
rs6135512 | 0.95[CEU][hapmap];0.87[EUR][1000 genomes] |
rs6135514 | 0.95[CEU][hapmap];0.89[EUR][1000 genomes] |
rs6135517 | 0.83[JPT][hapmap] |
rs6135519 | 0.84[EUR][1000 genomes] |
rs6135520 | 0.90[CEU][hapmap];0.80[EUR][1000 genomes] |
rs6135521 | 0.89[CEU][hapmap];0.83[EUR][1000 genomes] |
rs62194716 | 0.87[EUR][1000 genomes] |
rs6514613 | 0.89[CEU][hapmap] |
rs7269144 | 0.81[CEU][hapmap] |
rs7273944 | 0.81[CEU][hapmap] |
rs761262 | 0.84[EUR][1000 genomes] |
rs764140 | 0.89[CEU][hapmap];0.87[EUR][1000 genomes] |
rs8120389 | 0.84[EUR][1000 genomes] |
rs877270 | 0.81[CEU][hapmap] |
rs877271 | 0.81[CEU][hapmap] |
rs979530 | 0.84[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv869328 | chr20:15325423-16213898 | Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
2 | nsv833928 | chr20:15619962-15780758 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
3 | nsv458934 | chr20:15738086-15772582 | Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
4 | nsv585641 | chr20:15738086-15772582 | Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
5 | nsv585642 | chr20:15738086-15772876 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
6 | nsv519883 | chr20:15738086-15817106 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
7 | esv2762063 | chr20:15755244-15765167 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | diseases |
8 | nsv585643 | chr20:15759361-15796051 | Flanking Active TSS Enhancers Weak transcription Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
9 | nsv912793 | chr20:15760969-15807441 | Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr20:15758200-15768800 | Weak transcription | iPS-20b Cell Line | embryonic stem cell |
2 | chr20:15760400-15765800 | Weak transcription | HUES48 Cell Line | embryonic stem cell |