Variant report
Variant | rs7269144 |
---|---|
Chromosome Location | chr20:15775471-15775472 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs12624706 | 0.88[CEU][hapmap];0.85[EUR][1000 genomes] |
rs13039564 | 0.86[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs13041254 | 0.89[CEU][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes] |
rs13042688 | 0.94[CEU][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs13044785 | 0.89[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs16996587 | 1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs1997798 | 0.89[EUR][1000 genomes] |
rs2109535 | 0.84[EUR][1000 genomes] |
rs2109536 | 0.89[EUR][1000 genomes] |
rs2327966 | 0.94[CEU][hapmap] |
rs33952091 | 0.82[AMR][1000 genomes];0.83[EUR][1000 genomes] |
rs35973686 | 0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs36034970 | 0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs4292145 | 0.87[EUR][1000 genomes] |
rs4426588 | 0.87[EUR][1000 genomes] |
rs4627651 | 0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs6034288 | 0.85[CEU][hapmap] |
rs6034289 | 0.81[CEU][hapmap] |
rs6043529 | 0.83[CEU][hapmap] |
rs6043530 | 0.83[CEU][hapmap] |
rs6043539 | 0.89[CEU][hapmap] |
rs6131701 | 0.82[CEU][hapmap] |
rs6131706 | 0.80[CEU][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs6131713 | 0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs6131714 | 0.90[CEU][hapmap];0.89[EUR][1000 genomes] |
rs6131715 | 0.90[CEU][hapmap];0.89[EUR][1000 genomes] |
rs6131716 | 0.90[CEU][hapmap];0.89[EUR][1000 genomes] |
rs6131717 | 0.90[CEU][hapmap];0.89[EUR][1000 genomes] |
rs6131718 | 0.90[CEU][hapmap];0.89[EUR][1000 genomes] |
rs6131727 | 0.94[CEU][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs6135506 | 0.89[CEU][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes] |
rs6135508 | 0.89[CEU][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes] |
rs6135509 | 0.88[CEU][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes] |
rs6135511 | 1.00[CEU][hapmap];0.89[EUR][1000 genomes] |
rs6135512 | 0.89[CEU][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs6135514 | 0.89[CEU][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes] |
rs6135519 | 0.88[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs6135520 | 0.90[CEU][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs6135521 | 0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs6135528 | 0.94[CEU][hapmap];0.82[CHB][hapmap];0.90[YRI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs6135529 | 0.94[CEU][hapmap];0.83[CHB][hapmap];0.90[YRI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs6135530 | 0.94[CEU][hapmap];0.82[CHB][hapmap];0.83[YRI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs6135531 | 0.94[CEU][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs6135543 | 0.94[CEU][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs6135545 | 0.87[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs6135557 | 0.89[CHB][hapmap] |
rs62194716 | 0.83[AMR][1000 genomes];0.83[EUR][1000 genomes] |
rs6514613 | 0.94[CEU][hapmap] |
rs7273944 | 1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs761262 | 0.88[CEU][hapmap];0.89[EUR][1000 genomes] |
rs764140 | 0.88[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs877270 | 1.00[CEU][hapmap] |
rs877271 | 1.00[CEU][hapmap] |
rs979530 | 0.89[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv869328 | chr20:15325423-16213898 | Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
2 | nsv833928 | chr20:15619962-15780758 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
3 | nsv519883 | chr20:15738086-15817106 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
4 | nsv585643 | chr20:15759361-15796051 | Flanking Active TSS Enhancers Weak transcription Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
5 | nsv912793 | chr20:15760969-15807441 | Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
6 | nsv833929 | chr20:15765372-15977337 | Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
7 | esv1847965 | chr20:15766727-15807441 | Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
8 | nsv585644 | chr20:15766727-15807441 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
9 | esv3350062 | chr20:15773602-15775700 | Weak transcription Enhancers | n/a | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr20:15770200-15775800 | Weak transcription | Ganglion Eminence derived primary cultured neurospheres | brain |
2 | chr20:15770200-15776400 | Weak transcription | iPS-15b Cell Line | embryonic stem cell |
3 | chr20:15770800-15780000 | Weak transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |
4 | chr20:15773600-15777600 | Enhancers | H9 Derived Neuron Cultured Cells | ES cell derived |
5 | chr20:15775000-15776000 | Enhancers | HUES48 Cell Line | embryonic stem cell |
6 | chr20:15775000-15776800 | Enhancers | Brain Germinal Matrix | brain |
7 | chr20:15775200-15776800 | Enhancers | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |