Variant report

Variant	rs6131715
Chromosome Location	chr20:15778346-15778347
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs12480313	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12624706	0.84[EUR][1000 genomes]
rs13039564	0.90[EUR][1000 genomes]
rs13041254	0.84[CEU][hapmap]
rs13042688	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs13044785	0.91[EUR][1000 genomes]
rs16996587	0.88[CEU][hapmap];0.91[EUR][1000 genomes]
rs1997798	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2109535	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2109536	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2327966	1.00[CEU][hapmap]
rs35973686	0.83[EUR][1000 genomes]
rs36034970	0.93[EUR][1000 genomes]
rs4292145	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4426588	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4627651	0.89[EUR][1000 genomes]
rs4813196	0.83[EUR][1000 genomes]
rs4813197	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6034288	0.85[CEU][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6034289	0.81[CEU][hapmap];0.84[EUR][1000 genomes]
rs6043539	0.84[CEU][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6131706	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs6131711	0.87[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs6131713	0.89[EUR][1000 genomes]
rs6131714	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6131716	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6131717	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6131718	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6131726	0.91[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs6131727	0.95[CEU][hapmap];0.89[EUR][1000 genomes]
rs6135506	0.84[CEU][hapmap]
rs6135507	0.83[EUR][1000 genomes]
rs6135508	0.84[CEU][hapmap]
rs6135511	0.94[CEU][hapmap]
rs6135512	0.84[CEU][hapmap]
rs6135514	0.84[CEU][hapmap]
rs6135519	0.80[EUR][1000 genomes]
rs6135521	0.81[EUR][1000 genomes]
rs6135528	0.95[CEU][hapmap];0.89[EUR][1000 genomes]
rs6135529	0.95[CEU][hapmap];0.89[EUR][1000 genomes]
rs6135530	0.94[CEU][hapmap];0.89[EUR][1000 genomes]
rs6135531	0.94[CEU][hapmap];0.93[EUR][1000 genomes]
rs6135543	0.95[CEU][hapmap];0.91[EUR][1000 genomes]
rs6135545	0.91[EUR][1000 genomes]
rs6135550	0.91[CHB][hapmap];0.87[JPT][hapmap];0.86[ASN][1000 genomes]
rs6514613	0.88[CEU][hapmap]
rs7269144	0.90[CEU][hapmap];0.89[EUR][1000 genomes]
rs7273944	0.90[CEU][hapmap];0.90[EUR][1000 genomes]
rs761262	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs877270	0.90[CEU][hapmap]
rs877271	0.90[CEU][hapmap]
rs979530	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv833928	chr20:15619962-15780758	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv519883	chr20:15738086-15817106	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv585643	chr20:15759361-15796051	Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv912793	chr20:15760969-15807441	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv833929	chr20:15765372-15977337	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv1847965	chr20:15766727-15807441	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv585644	chr20:15766727-15807441	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15770800-15780000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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