Variant report

Variant	rs6131727
Chromosome Location	chr20:15796805-15796806
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:15784951..15787296-chr20:15795585..15797238,2	MCF-7	breast:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs12624706	0.82[CEU][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13039564	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13041254	0.84[CEU][hapmap];0.80[AMR][1000 genomes]
rs13042688	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13044785	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16996587	0.94[CEU][hapmap];0.82[CHB][hapmap];0.81[YRI][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1997798	0.89[EUR][1000 genomes]
rs2109535	0.84[EUR][1000 genomes]
rs2109536	0.89[EUR][1000 genomes]
rs2327966	1.00[CEU][hapmap]
rs33952091	0.80[AMR][1000 genomes]
rs35973686	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs36034970	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4292145	0.86[EUR][1000 genomes]
rs4426588	0.86[EUR][1000 genomes]
rs4627651	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6043539	0.84[CEU][hapmap]
rs6131706	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs6131713	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6131714	0.95[CEU][hapmap];0.89[EUR][1000 genomes]
rs6131715	0.95[CEU][hapmap];0.89[EUR][1000 genomes]
rs6131716	0.95[CEU][hapmap];0.89[EUR][1000 genomes]
rs6131717	0.95[CEU][hapmap];0.89[EUR][1000 genomes]
rs6131718	0.95[CEU][hapmap];0.89[EUR][1000 genomes]
rs6135506	0.84[CEU][hapmap];0.80[AMR][1000 genomes]
rs6135508	0.84[CEU][hapmap]
rs6135509	0.82[CEU][hapmap];0.80[AMR][1000 genomes]
rs6135511	0.94[CEU][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6135512	0.84[CEU][hapmap];0.80[AMR][1000 genomes]
rs6135514	0.84[CEU][hapmap]
rs6135519	0.83[EUR][1000 genomes]
rs6135520	0.84[CEU][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6135521	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs6135528	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6135529	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6135530	1.00[CEU][hapmap];0.82[CHB][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6135531	1.00[CEU][hapmap];0.83[CHB][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6135543	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6135545	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6135557	0.81[CHB][hapmap];0.89[YRI][hapmap];0.96[AFR][1000 genomes]
rs62194716	0.82[AMR][1000 genomes]
rs6514613	0.88[CEU][hapmap]
rs7269144	0.94[CEU][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7273944	0.94[CEU][hapmap];0.82[CHB][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs761262	0.94[CEU][hapmap];0.89[EUR][1000 genomes]
rs764140	0.82[CEU][hapmap];0.80[AMR][1000 genomes]
rs877270	0.94[CEU][hapmap];0.82[CHB][hapmap]
rs877271	0.94[CEU][hapmap];0.82[CHB][hapmap]
rs979530	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv519883	chr20:15738086-15817106	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv912793	chr20:15760969-15807441	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv833929	chr20:15765372-15977337	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv1847965	chr20:15766727-15807441	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv585644	chr20:15766727-15807441	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv2754713	chr20:15785800-15816800	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv585645	chr20:15796051-15817106	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv458935	chr20:15796658-15816595	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv585646	chr20:15796658-15816595	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15790200-15799000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr20:15796000-15798200	Weak transcription	HSMMtube	muscle
3	chr20:15796000-15799000	Weak transcription	Liver	Liver
4	chr20:15796200-15798000	Weak transcription	HSMM	muscle
5	chr20:15796400-15798400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr20:15796800-15797600	Enhancers	Placenta Amnion	Placenta Amnion

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