Variant report

Variant	rs6514613
Chromosome Location	chr20:15751333-15751334
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:15750671..15752397-chr20:15882354..15885004,2	MCF-7	breast:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs12624706	1.00[CEU][hapmap]
rs13041254	0.94[CEU][hapmap];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13042688	0.88[CEU][hapmap]
rs16996587	0.93[CEU][hapmap]
rs2327966	0.94[CEU][hapmap]
rs33952091	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34608080	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35052348	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4813196	0.88[CEU][hapmap]
rs6034288	0.94[CEU][hapmap]
rs6034289	0.89[CEU][hapmap]
rs6043529	0.94[CEU][hapmap];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6043530	0.94[CEU][hapmap];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6043539	0.94[CEU][hapmap]
rs6131701	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6131706	0.84[CEU][hapmap]
rs6131714	0.88[CEU][hapmap]
rs6131715	0.88[CEU][hapmap]
rs6131716	0.88[CEU][hapmap]
rs6131717	0.88[CEU][hapmap]
rs6131718	0.88[CEU][hapmap]
rs6131727	0.88[CEU][hapmap]
rs6135506	0.94[CEU][hapmap];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6135508	0.94[CEU][hapmap];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6135509	0.94[CEU][hapmap];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6135511	0.94[CEU][hapmap]
rs6135512	0.94[CEU][hapmap];0.92[ASN][1000 genomes]
rs6135514	0.94[CEU][hapmap];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6135520	0.94[CEU][hapmap]
rs6135521	0.82[CEU][hapmap]
rs6135528	0.88[CEU][hapmap]
rs6135529	0.88[CEU][hapmap]
rs6135530	0.87[CEU][hapmap]
rs6135531	0.94[CEU][hapmap]
rs6135543	0.88[CEU][hapmap]
rs62194690	0.88[EUR][1000 genomes]
rs62194691	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62194716	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7269144	0.94[CEU][hapmap]
rs7273944	0.94[CEU][hapmap]
rs761262	0.87[CEU][hapmap]
rs764140	0.93[CEU][hapmap];0.91[ASN][1000 genomes]
rs8120389	0.83[EUR][1000 genomes]
rs877270	0.94[CEU][hapmap]
rs877271	0.94[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv833928	chr20:15619962-15780758	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv912791	chr20:15702037-15759361	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv458934	chr20:15738086-15772582	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv585641	chr20:15738086-15772582	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv585642	chr20:15738086-15772876	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv519883	chr20:15738086-15817106	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15750800-15751800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr20:15751000-15752000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr20:15751200-15751800	Enhancers	Placenta Amnion	Placenta Amnion
4	chr20:15751200-15752200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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