Variant report

Variant	rs6134232
Chromosome Location	chr20:11365641-11365642
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:11330194..11333067-chr20:11363546..11365974,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1107551	0.87[ASN][1000 genomes]
rs11087022	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11087023	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11087024	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11697844	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12625544	0.85[ASN][1000 genomes]
rs12625567	0.85[ASN][1000 genomes]
rs1997878	0.85[ASN][1000 genomes]
rs2103762	0.84[ASN][1000 genomes]
rs2143874	0.85[ASN][1000 genomes]
rs2207121	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2223865	0.97[AFR][1000 genomes]
rs2223866	0.81[EUR][1000 genomes]
rs2223868	0.80[EUR][1000 genomes]
rs2327404	0.81[EUR][1000 genomes]
rs35961934	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4528833	0.85[ASN][1000 genomes]
rs4538269	0.84[ASN][1000 genomes]
rs4541301	0.81[ASN][1000 genomes]
rs4813992	0.81[EUR][1000 genomes]
rs6033121	0.85[ASN][1000 genomes]
rs6040577	0.84[ASN][1000 genomes]
rs6040582	0.85[ASN][1000 genomes]
rs6040583	0.85[ASN][1000 genomes]
rs6040591	0.85[ASN][1000 genomes]
rs6040592	0.85[ASN][1000 genomes]
rs6131193	0.85[ASN][1000 genomes]
rs6131194	0.85[ASN][1000 genomes]
rs6134215	0.85[ASN][1000 genomes]
rs6134221	0.85[ASN][1000 genomes]
rs6134223	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6134225	0.82[EUR][1000 genomes]
rs6134226	0.82[EUR][1000 genomes]
rs6134227	0.81[EUR][1000 genomes]
rs6134228	0.81[EUR][1000 genomes]
rs6134229	0.81[EUR][1000 genomes]
rs6134237	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8122050	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065969	chr20:10850562-11464172	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv544181	chr20:10850562-11464172	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv585415	chr20:11134907-11383327	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:11363400-11367600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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