Variant report

Variant	rs61363059
Chromosome Location	chr6:13551315-13551316
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11965206	1.00[EUR][1000 genomes]
rs56785198	1.00[EUR][1000 genomes]
rs58416076	1.00[EUR][1000 genomes]
rs6920103	1.00[EUR][1000 genomes]
rs6935424	1.00[EUR][1000 genomes]
rs7748792	1.00[EUR][1000 genomes]
rs7764951	1.00[EUR][1000 genomes]
rs7772368	1.00[EUR][1000 genomes]
rs9464199	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532021	chr6:13232627-13805381	Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv1033620	chr6:13419730-13571788	Weak transcription Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13544800-13555200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:13545200-13555000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr6:13547200-13554600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr6:13549400-13554200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:13549400-13556000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr6:13549600-13554600	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr6:13550000-13551600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:13550200-13557200	Weak transcription	Liver	Liver
9	chr6:13550600-13552200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr6:13550800-13551400	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr6:13551200-13555600	Weak transcription	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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