Variant report

Variant	rs11965206
Chromosome Location	chr6:13608272-13608273
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:13574003..13575570-chr6:13606096..13609032,2	K562	blood:
2	chr6:13607377..13609730-chr6:13678549..13680524,2	K562	blood:
3	chr6:13574003..13577253-chr6:13602970..13609032,6	K562	blood:
4	chr6:13606772..13609180-chr6:13609445..13611414,3	K562	blood:
5	chr6:13601149..13604044-chr6:13605936..13609262,4	MCF-7	breast:
6	chr6:13582374..13584520-chr6:13608050..13610038,2	K562	blood:
7	chr6:13588129..13591688-chr6:13606466..13609546,3	K562	blood:

Variant related genes	Relation type
ENSG00000252966	Chromatin interaction
ENSG00000124523	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16874314	1.00[EUR][1000 genomes]
rs56785198	1.00[EUR][1000 genomes]
rs58416076	1.00[EUR][1000 genomes]
rs61363059	1.00[EUR][1000 genomes]
rs6920103	1.00[EUR][1000 genomes]
rs6935424	1.00[EUR][1000 genomes]
rs73723765	1.00[EUR][1000 genomes]
rs7748792	1.00[EUR][1000 genomes]
rs7764951	1.00[EUR][1000 genomes]
rs7772368	1.00[EUR][1000 genomes]
rs9464199	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532021	chr6:13232627-13805381	Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13575600-13613800	Weak transcription	Stomach Mucosa	stomach
2	chr6:13575600-13614400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:13575800-13614200	Weak transcription	HUVEC	blood vessel
4	chr6:13575800-13614600	Weak transcription	Right Atrium	heart
5	chr6:13576200-13614400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr6:13580400-13614800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:13585600-13613800	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr6:13587000-13608600	Strong transcription	Rectal Mucosa Donor 31	rectum
9	chr6:13588400-13614200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr6:13588600-13611800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr6:13588600-13614000	Weak transcription	NHLF	lung
12	chr6:13588600-13614400	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr6:13588800-13614600	Weak transcription	Small Intestine	intestine
14	chr6:13589000-13611800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr6:13589000-13614400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr6:13593000-13613600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr6:13594400-13613600	Weak transcription	NH-A	brain
18	chr6:13595000-13613600	Weak transcription	Dnd41	blood
19	chr6:13595600-13611800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr6:13595600-13613200	Weak transcription	Pancreas	Pancrea
21	chr6:13595600-13614600	Weak transcription	Thymus	Thymus
22	chr6:13595600-13614800	Weak transcription	Aorta	Aorta
23	chr6:13595800-13613600	Weak transcription	Fetal Brain Male	brain
24	chr6:13596000-13610800	Weak transcription	GM12878-XiMat	blood
25	chr6:13597200-13613800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr6:13597200-13614400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr6:13597200-13614400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr6:13597600-13613800	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr6:13597600-13614400	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr6:13597600-13614400	Weak transcription	Fetal Lung	lung
31	chr6:13598200-13613400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr6:13598600-13613400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr6:13598600-13614400	Weak transcription	Fetal Kidney	kidney
34	chr6:13599400-13614400	Weak transcription	Esophagus	oesophagus
35	chr6:13599400-13614800	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr6:13599600-13614800	Weak transcription	Gastric	stomach
37	chr6:13601400-13613600	Weak transcription	A549	lung
38	chr6:13601400-13614400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr6:13601400-13614400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
40	chr6:13601600-13613000	Weak transcription	Fetal Brain Female	brain
41	chr6:13601600-13613400	Weak transcription	Brain Anterior Caudate	brain
42	chr6:13601600-13614400	Weak transcription	Colonic Mucosa	Colon
43	chr6:13601600-13614400	Weak transcription	Colon Smooth Muscle	Colon
44	chr6:13601600-13614400	Weak transcription	Rectal Smooth Muscle	rectum
45	chr6:13601600-13614400	Weak transcription	Right Ventricle	heart
46	chr6:13601600-13614400	Weak transcription	Spleen	Spleen
47	chr6:13601600-13614800	Weak transcription	Brain Substantia Nigra	brain
48	chr6:13601800-13611000	Weak transcription	Fetal Heart	heart
49	chr6:13601800-13611800	Weak transcription	Osteobl	bone
50	chr6:13601800-13613600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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