Variant report

Variant	rs58416076
Chromosome Location	chr6:13725704-13725705
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:13712256..13714398-chr6:13725384..13727195,2	MCF-7	breast:
2	chr6:13723807..13725735-chr6:13795426..13797327,2	MCF-7	breast:
3	chr6:13708644..13711231-chr6:13725404..13728369,2	MCF-7	breast:
4	chr6:13709798..13714586-chr6:13721714..13727470,15	MCF-7	breast:
5	chr6:13614610..13616465-chr6:13723162..13726021,2	MCF-7	breast:
6	chr6:13573713..13576541-chr6:13724358..13726417,2	MCF-7	breast:
7	chr6:13614373..13616777-chr6:13723267..13727531,4	MCF-7	breast:
8	chr6:13724511..13727426-chr6:13727934..13730213,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000010017	Chromatin interaction
ENSG00000261071	Chromatin interaction
ENSG00000124523	Chromatin interaction
ENSG00000225921	Chromatin interaction

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs11965206	1.00[EUR][1000 genomes]
rs16874314	1.00[EUR][1000 genomes]
rs16874365	1.00[EUR][1000 genomes]
rs17409796	1.00[EUR][1000 genomes]
rs2009137	1.00[EUR][1000 genomes]
rs55694338	1.00[EUR][1000 genomes]
rs55825143	1.00[EUR][1000 genomes]
rs56075825	1.00[EUR][1000 genomes]
rs56132468	1.00[EUR][1000 genomes]
rs56785198	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56787533	1.00[EUR][1000 genomes]
rs56820870	1.00[EUR][1000 genomes]
rs57916848	1.00[EUR][1000 genomes]
rs58191581	1.00[EUR][1000 genomes]
rs58548280	1.00[EUR][1000 genomes]
rs58587778	1.00[EUR][1000 genomes]
rs58618044	1.00[EUR][1000 genomes]
rs58864192	1.00[EUR][1000 genomes]
rs58883873	1.00[EUR][1000 genomes]
rs58884133	1.00[EUR][1000 genomes]
rs58920414	1.00[EUR][1000 genomes]
rs58930299	1.00[EUR][1000 genomes]
rs59177919	1.00[EUR][1000 genomes]
rs59442894	1.00[EUR][1000 genomes]
rs59457086	1.00[EUR][1000 genomes]
rs59595029	1.00[EUR][1000 genomes]
rs59777177	1.00[EUR][1000 genomes]
rs59928993	1.00[EUR][1000 genomes]
rs60194373	1.00[EUR][1000 genomes]
rs60317071	1.00[EUR][1000 genomes]
rs60379998	1.00[EUR][1000 genomes]
rs60692139	1.00[EUR][1000 genomes]
rs60744650	1.00[EUR][1000 genomes]
rs61343047	1.00[EUR][1000 genomes]
rs61363059	1.00[EUR][1000 genomes]
rs61417318	1.00[EUR][1000 genomes]
rs61578549	1.00[EUR][1000 genomes]
rs6902171	1.00[EUR][1000 genomes]
rs6902522	1.00[EUR][1000 genomes]
rs6911761	1.00[EUR][1000 genomes]
rs6911899	1.00[EUR][1000 genomes]
rs6912245	1.00[EUR][1000 genomes]
rs6915720	1.00[EUR][1000 genomes]
rs6920103	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6921513	1.00[EUR][1000 genomes]
rs6921779	1.00[EUR][1000 genomes]
rs6923370	1.00[EUR][1000 genomes]
rs6934078	1.00[EUR][1000 genomes]
rs6935424	1.00[EUR][1000 genomes]
rs6938952	1.00[EUR][1000 genomes]
rs6938981	1.00[EUR][1000 genomes]
rs6939113	1.00[EUR][1000 genomes]
rs6939150	1.00[EUR][1000 genomes]
rs6939346	1.00[EUR][1000 genomes]
rs6940950	1.00[EUR][1000 genomes]
rs73360454	1.00[EUR][1000 genomes]
rs73360474	1.00[EUR][1000 genomes]
rs73723765	1.00[EUR][1000 genomes]
rs73723777	1.00[EUR][1000 genomes]
rs73723781	1.00[EUR][1000 genomes]
rs73723782	1.00[EUR][1000 genomes]
rs73723783	1.00[EUR][1000 genomes]
rs73723784	1.00[EUR][1000 genomes]
rs73723789	1.00[EUR][1000 genomes]
rs73723794	1.00[EUR][1000 genomes]
rs73723795	1.00[EUR][1000 genomes]
rs73723797	1.00[EUR][1000 genomes]
rs73723798	1.00[EUR][1000 genomes]
rs73723801	1.00[EUR][1000 genomes]
rs73726004	1.00[EUR][1000 genomes]
rs73726007	1.00[EUR][1000 genomes]
rs73726009	1.00[EUR][1000 genomes]
rs73726032	1.00[EUR][1000 genomes]
rs73726035	1.00[EUR][1000 genomes]
rs73726042	1.00[EUR][1000 genomes]
rs7748792	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7759397	1.00[EUR][1000 genomes]
rs7759532	1.00[EUR][1000 genomes]
rs7764951	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7772368	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9464199	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532021	chr6:13232627-13805381	Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv883451	chr6:13704341-13728670	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases
3	nsv883452	chr6:13704341-13733565	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13720200-13729800	Weak transcription	Esophagus	oesophagus
2	chr6:13722800-13726200	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr6:13722800-13726200	Enhancers	Stomach Mucosa	stomach
4	chr6:13722800-13726800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr6:13722800-13727000	Enhancers	Primary T cells fromperipheralblood	blood
6	chr6:13722800-13727800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr6:13723200-13726800	Enhancers	HMEC	breast
8	chr6:13723600-13726600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:13723600-13726800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr6:13724000-13727200	Enhancers	Placenta	Placenta
11	chr6:13724200-13725800	Enhancers	A549	lung
12	chr6:13724400-13726800	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr6:13724600-13725800	Weak transcription	Thymus	Thymus
14	chr6:13724600-13726200	Enhancers	Hela-S3	cervix
15	chr6:13724600-13733000	Weak transcription	K562	blood
16	chr6:13724800-13725800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr6:13724800-13725800	Weak transcription	Fetal Thymus	thymus
18	chr6:13724800-13728400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr6:13724800-13729000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr6:13725000-13726000	Enhancers	Rectal Mucosa Donor 31	rectum
21	chr6:13725200-13726200	Enhancers	Primary T cells from cord blood	blood
22	chr6:13725200-13726200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
23	chr6:13725200-13726600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr6:13725200-13726600	Enhancers	Primary T killer memory cells from peripheral blood	blood
25	chr6:13725400-13725800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr6:13725400-13726000	Enhancers	Primary T helper naive cells from peripheral blood	blood
27	chr6:13725400-13726000	Flanking Active TSS	NHEK	skin
28	chr6:13725400-13726200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
29	chr6:13725400-13726800	Enhancers	Placenta Amnion	Placenta Amnion
30	chr6:13725600-13726000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
31	chr6:13725600-13726000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr6:13725600-13726400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
33	chr6:13725600-13726800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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