Variant report

Variant	rs73360454
Chromosome Location	chr6:13809636-13809637
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:13709898..13714007-chr6:13809605..13814723,8	K562	blood:
2	chr6:13709898..13716469-chr6:13809605..13815390,11	K562	blood:

Variant related genes	Relation type
ENSG00000010017	Chromatin interaction

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs1192053	1.00[EUR][1000 genomes]
rs16874314	1.00[EUR][1000 genomes]
rs16874365	1.00[EUR][1000 genomes]
rs17409796	1.00[EUR][1000 genomes]
rs2009137	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55694338	1.00[EUR][1000 genomes]
rs55825143	1.00[EUR][1000 genomes]
rs56075825	1.00[EUR][1000 genomes]
rs56132468	1.00[EUR][1000 genomes]
rs56785198	1.00[EUR][1000 genomes]
rs56787533	1.00[EUR][1000 genomes]
rs56820870	1.00[EUR][1000 genomes]
rs57707835	1.00[EUR][1000 genomes]
rs57891360	1.00[EUR][1000 genomes]
rs57916848	1.00[EUR][1000 genomes]
rs58191581	1.00[EUR][1000 genomes]
rs58416076	1.00[EUR][1000 genomes]
rs58548280	1.00[EUR][1000 genomes]
rs58587778	1.00[EUR][1000 genomes]
rs58618044	1.00[EUR][1000 genomes]
rs58736051	1.00[EUR][1000 genomes]
rs58793310	1.00[EUR][1000 genomes]
rs58864192	1.00[EUR][1000 genomes]
rs58883873	1.00[EUR][1000 genomes]
rs58884133	1.00[EUR][1000 genomes]
rs58920414	1.00[EUR][1000 genomes]
rs58930299	1.00[EUR][1000 genomes]
rs59177919	1.00[EUR][1000 genomes]
rs59297313	1.00[EUR][1000 genomes]
rs59442894	1.00[EUR][1000 genomes]
rs59457086	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59595029	1.00[EUR][1000 genomes]
rs59777177	1.00[EUR][1000 genomes]
rs59928993	1.00[EUR][1000 genomes]
rs60194373	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60317071	1.00[EUR][1000 genomes]
rs60379998	1.00[EUR][1000 genomes]
rs60692139	1.00[EUR][1000 genomes]
rs60744650	1.00[EUR][1000 genomes]
rs61343047	1.00[EUR][1000 genomes]
rs61417318	1.00[EUR][1000 genomes]
rs61578549	1.00[EUR][1000 genomes]
rs6902171	1.00[EUR][1000 genomes]
rs6902522	1.00[EUR][1000 genomes]
rs6911761	1.00[EUR][1000 genomes]
rs6911899	1.00[EUR][1000 genomes]
rs6912245	1.00[EUR][1000 genomes]
rs6915720	1.00[EUR][1000 genomes]
rs6916720	1.00[EUR][1000 genomes]
rs6920103	1.00[EUR][1000 genomes]
rs6921389	1.00[EUR][1000 genomes]
rs6921513	1.00[EUR][1000 genomes]
rs6921779	1.00[EUR][1000 genomes]
rs6923370	1.00[EUR][1000 genomes]
rs6925050	1.00[EUR][1000 genomes]
rs6925589	1.00[EUR][1000 genomes]
rs6934078	1.00[EUR][1000 genomes]
rs6935424	1.00[EUR][1000 genomes]
rs6938952	1.00[EUR][1000 genomes]
rs6938981	1.00[EUR][1000 genomes]
rs6939113	1.00[EUR][1000 genomes]
rs6939150	1.00[EUR][1000 genomes]
rs6939346	1.00[EUR][1000 genomes]
rs6940950	1.00[EUR][1000 genomes]
rs73360474	1.00[EUR][1000 genomes]
rs73723765	1.00[EUR][1000 genomes]
rs73723777	1.00[EUR][1000 genomes]
rs73723781	1.00[EUR][1000 genomes]
rs73723782	1.00[EUR][1000 genomes]
rs73723783	1.00[EUR][1000 genomes]
rs73723784	1.00[EUR][1000 genomes]
rs73723789	1.00[EUR][1000 genomes]
rs73723794	1.00[EUR][1000 genomes]
rs73723795	1.00[EUR][1000 genomes]
rs73723797	1.00[EUR][1000 genomes]
rs73723798	1.00[EUR][1000 genomes]
rs73723801	1.00[EUR][1000 genomes]
rs73726004	1.00[EUR][1000 genomes]
rs73726007	1.00[EUR][1000 genomes]
rs73726009	1.00[EUR][1000 genomes]
rs73726032	1.00[EUR][1000 genomes]
rs73726035	1.00[EUR][1000 genomes]
rs73726042	1.00[EUR][1000 genomes]
rs73726044	1.00[EUR][1000 genomes]
rs7748792	1.00[EUR][1000 genomes]
rs7759397	1.00[EUR][1000 genomes]
rs7759532	1.00[EUR][1000 genomes]
rs7764951	1.00[EUR][1000 genomes]
rs7772368	1.00[EUR][1000 genomes]
rs9464199	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv349719	chr6:13805047-13809959	Strong transcription Weak transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13788000-13810600	Weak transcription	Fetal Heart	heart
2	chr6:13788000-13810800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:13788000-13812200	Weak transcription	Aorta	Aorta
4	chr6:13788000-13813200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr6:13788000-13813400	Weak transcription	Brain Germinal Matrix	brain
6	chr6:13788400-13810600	Weak transcription	Colonic Mucosa	Colon
7	chr6:13788600-13810800	Weak transcription	Stomach Mucosa	stomach
8	chr6:13788800-13810600	Weak transcription	Small Intestine	intestine
9	chr6:13788800-13812200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr6:13788800-13813600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr6:13792600-13810800	Weak transcription	Spleen	Spleen
12	chr6:13793000-13813200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr6:13794800-13812200	Weak transcription	HMEC	breast
14	chr6:13795200-13810800	Weak transcription	NHLF	lung
15	chr6:13795400-13812200	Weak transcription	HUVEC	blood vessel
16	chr6:13796000-13809800	Strong transcription	Dnd41	blood
17	chr6:13796000-13811000	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr6:13796800-13809800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr6:13797000-13809800	Strong transcription	HUES48 Cell Line	embryonic stem cell
20	chr6:13797600-13810600	Strong transcription	Fetal Intestine Small	intestine
21	chr6:13799800-13811400	Weak transcription	Ovary	ovary
22	chr6:13799800-13812000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr6:13800600-13813600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr6:13801400-13812200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr6:13801400-13813200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr6:13801600-13811000	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr6:13801600-13813200	Weak transcription	A549	lung
28	chr6:13801800-13812600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr6:13802000-13810800	Weak transcription	Brain Substantia Nigra	brain
30	chr6:13802000-13812200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr6:13802200-13810600	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr6:13802200-13811000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr6:13802200-13811800	Weak transcription	Fetal Brain Male	brain
34	chr6:13802600-13810800	Weak transcription	Psoas Muscle	Psoas
35	chr6:13802600-13811600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr6:13802600-13812400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
37	chr6:13802800-13810800	Weak transcription	Colon Smooth Muscle	Colon
38	chr6:13802800-13810800	Weak transcription	Fetal Kidney	kidney
39	chr6:13802800-13810800	Weak transcription	Gastric	stomach
40	chr6:13802800-13810800	Weak transcription	Right Ventricle	heart
41	chr6:13802800-13810800	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr6:13802800-13811000	Weak transcription	Brain Cingulate Gyrus	brain
43	chr6:13802800-13811000	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr6:13802800-13811000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr6:13802800-13811000	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr6:13802800-13811800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr6:13802800-13811800	Weak transcription	Primary hematopoietic stem cells	blood
48	chr6:13802800-13811800	Weak transcription	Left Ventricle	heart
49	chr6:13802800-13812200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
50	chr6:13802800-13813000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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