Variant report

Variant	rs56820870
Chromosome Location	chr6:13869874-13869875
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:13865916..13870763-chr6:13872402..13875554,5	MCF-7	breast:
2	chr6:13865780..13870823-chr6:13871256..13876608,7	MCF-7	breast:
3	chr6:13862519..13866858-chr6:13869223..13874616,6	K562	blood:

Extended variants
information (count: 110 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:110)

rs_ID	r²[population]
rs10484346	1.00[EUR][1000 genomes]
rs1192053	1.00[EUR][1000 genomes]
rs11965901	1.00[EUR][1000 genomes]
rs16874314	1.00[EUR][1000 genomes]
rs16874365	1.00[EUR][1000 genomes]
rs16874553	1.00[EUR][1000 genomes]
rs16874594	1.00[EUR][1000 genomes]
rs17409796	1.00[EUR][1000 genomes]
rs2009137	1.00[EUR][1000 genomes]
rs2068206	1.00[EUR][1000 genomes]
rs55694338	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55825143	1.00[EUR][1000 genomes]
rs56075825	1.00[EUR][1000 genomes]
rs56132468	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56297167	1.00[EUR][1000 genomes]
rs56785198	1.00[EUR][1000 genomes]
rs56787533	1.00[EUR][1000 genomes]
rs57707835	1.00[EUR][1000 genomes]
rs57891360	1.00[EUR][1000 genomes]
rs57916848	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58191581	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58416076	1.00[EUR][1000 genomes]
rs58548280	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58587778	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58618044	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58736051	1.00[EUR][1000 genomes]
rs58793310	1.00[EUR][1000 genomes]
rs58864192	1.00[EUR][1000 genomes]
rs58883873	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58884133	1.00[EUR][1000 genomes]
rs58920414	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58930299	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59177919	1.00[EUR][1000 genomes]
rs59297313	1.00[EUR][1000 genomes]
rs59442894	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59457086	1.00[EUR][1000 genomes]
rs59595029	1.00[EUR][1000 genomes]
rs59777177	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59928993	1.00[EUR][1000 genomes]
rs60194373	1.00[EUR][1000 genomes]
rs60299276	0.89[AMR][1000 genomes]
rs60317071	1.00[EUR][1000 genomes]
rs60379998	1.00[EUR][1000 genomes]
rs60692139	1.00[EUR][1000 genomes]
rs60744650	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61343047	1.00[EUR][1000 genomes]
rs61417318	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61466290	1.00[EUR][1000 genomes]
rs61578549	1.00[EUR][1000 genomes]
rs6902171	1.00[EUR][1000 genomes]
rs6902522	1.00[EUR][1000 genomes]
rs6911430	1.00[EUR][1000 genomes]
rs6911761	1.00[EUR][1000 genomes]
rs6911899	1.00[EUR][1000 genomes]
rs6912245	1.00[EUR][1000 genomes]
rs6915720	1.00[EUR][1000 genomes]
rs6916720	1.00[EUR][1000 genomes]
rs6920103	1.00[EUR][1000 genomes]
rs6921389	1.00[EUR][1000 genomes]
rs6921513	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6921779	1.00[EUR][1000 genomes]
rs6923370	1.00[EUR][1000 genomes]
rs6925050	1.00[EUR][1000 genomes]
rs6925589	1.00[EUR][1000 genomes]
rs6934078	1.00[EUR][1000 genomes]
rs6935424	1.00[EUR][1000 genomes]
rs6938952	1.00[EUR][1000 genomes]
rs6938981	1.00[EUR][1000 genomes]
rs6939113	1.00[EUR][1000 genomes]
rs6939150	1.00[EUR][1000 genomes]
rs6939346	1.00[EUR][1000 genomes]
rs6940950	1.00[EUR][1000 genomes]
rs73360454	1.00[EUR][1000 genomes]
rs73360474	1.00[EUR][1000 genomes]
rs73364380	1.00[EUR][1000 genomes]
rs73366305	1.00[EUR][1000 genomes]
rs73366310	1.00[EUR][1000 genomes]
rs73366314	1.00[EUR][1000 genomes]
rs73366326	1.00[EUR][1000 genomes]
rs73366337	1.00[EUR][1000 genomes]
rs73369927	1.00[EUR][1000 genomes]
rs73369944	1.00[EUR][1000 genomes]
rs73369946	1.00[EUR][1000 genomes]
rs73369951	1.00[EUR][1000 genomes]
rs73723765	1.00[EUR][1000 genomes]
rs73723777	1.00[EUR][1000 genomes]
rs73723781	1.00[EUR][1000 genomes]
rs73723782	1.00[EUR][1000 genomes]
rs73723783	1.00[EUR][1000 genomes]
rs73723784	1.00[EUR][1000 genomes]
rs73723789	1.00[EUR][1000 genomes]
rs73723794	1.00[EUR][1000 genomes]
rs73723795	1.00[EUR][1000 genomes]
rs73723797	1.00[EUR][1000 genomes]
rs73723798	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73723801	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73726004	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73726007	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73726009	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73726032	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73726035	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73726042	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73726044	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7748792	1.00[EUR][1000 genomes]
rs7757894	1.00[EUR][1000 genomes]
rs7759397	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7759532	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7764951	1.00[EUR][1000 genomes]
rs7772368	1.00[EUR][1000 genomes]
rs9464199	1.00[EUR][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13864400-13872600	Weak transcription	Placenta	Placenta
2	chr6:13865600-13873200	Weak transcription	Fetal Intestine Small	intestine
3	chr6:13867200-13872600	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr6:13867200-13872600	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr6:13868400-13873400	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr6:13869200-13870000	Enhancers	Fetal Brain Male	brain
7	chr6:13869800-13871600	Enhancers	Cortex derived primary cultured neurospheres	brain

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