Variant report

Variant	rs73369944
Chromosome Location	chr6:14040435-14040436
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:14027216..14029032-chr6:14038895..14041733,2	MCF-7	breast:
2	chr6:13969727..13970299-chr6:14040161..14040805,2	MCF-7	breast:
3	chr6:13913195..13915012-chr6:14040198..14042535,2	K562	blood:
4	chr6:14030584..14036787-chr6:14037268..14040556,5	K562	blood:
5	chr6:14035982..14037504-chr6:14039133..14040792,2	K562	blood:
6	chr6:13909209..13909755-chr6:14040042..14040573,2	K562	blood:
7	chr6:13922517..13926049-chr6:14038472..14041936,3	K562	blood:

Variant related genes	Relation type
ENSG00000180537	Chromatin interaction

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10080702	1.00[EUR][1000 genomes]
rs10080734	1.00[EUR][1000 genomes]
rs10484346	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1192053	1.00[EUR][1000 genomes]
rs11965901	1.00[EUR][1000 genomes]
rs16874553	1.00[EUR][1000 genomes]
rs16874594	1.00[EUR][1000 genomes]
rs2068206	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55694338	1.00[EUR][1000 genomes]
rs55875628	1.00[EUR][1000 genomes]
rs56297167	1.00[EUR][1000 genomes]
rs56820870	1.00[EUR][1000 genomes]
rs57376077	1.00[EUR][1000 genomes]
rs57707835	1.00[EUR][1000 genomes]
rs57891360	1.00[EUR][1000 genomes]
rs57916848	1.00[EUR][1000 genomes]
rs58191581	1.00[EUR][1000 genomes]
rs58587778	1.00[EUR][1000 genomes]
rs58618044	1.00[EUR][1000 genomes]
rs58736051	1.00[EUR][1000 genomes]
rs58793310	1.00[EUR][1000 genomes]
rs58883873	1.00[EUR][1000 genomes]
rs58920414	1.00[EUR][1000 genomes]
rs58930299	1.00[EUR][1000 genomes]
rs59297313	1.00[EUR][1000 genomes]
rs59442894	1.00[EUR][1000 genomes]
rs59777177	1.00[EUR][1000 genomes]
rs60371731	1.00[EUR][1000 genomes]
rs60744650	1.00[EUR][1000 genomes]
rs61291802	1.00[EUR][1000 genomes]
rs61417318	1.00[EUR][1000 genomes]
rs61466290	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6911430	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6916720	1.00[EUR][1000 genomes]
rs6921389	1.00[EUR][1000 genomes]
rs6925050	1.00[EUR][1000 genomes]
rs6925589	1.00[EUR][1000 genomes]
rs73364380	1.00[EUR][1000 genomes]
rs73366305	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73366310	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73366314	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73366326	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73366337	1.00[EUR][1000 genomes]
rs73366340	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73369927	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73369946	1.00[EUR][1000 genomes]
rs73369951	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73373532	1.00[EUR][1000 genomes]
rs73373534	1.00[EUR][1000 genomes]
rs73724053	1.00[EUR][1000 genomes]
rs73726009	1.00[EUR][1000 genomes]
rs73726032	1.00[EUR][1000 genomes]
rs73726035	1.00[EUR][1000 genomes]
rs73726042	1.00[EUR][1000 genomes]
rs73726044	1.00[EUR][1000 genomes]
rs7757894	1.00[EUR][1000 genomes]
rs7759397	1.00[EUR][1000 genomes]
rs7759532	1.00[EUR][1000 genomes]
rs9464655	1.00[EUR][1000 genomes]
rs9464656	1.00[EUR][1000 genomes]
rs9464658	1.00[EUR][1000 genomes]
rs9476487	1.00[EUR][1000 genomes]
rs9476502	1.00[EUR][1000 genomes]
rs9476503	1.00[EUR][1000 genomes]
rs9476505	1.00[EUR][1000 genomes]
rs9476506	1.00[EUR][1000 genomes]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14040400-14044600	Weak transcription	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links