Variant report

Variant	rs9476502
Chromosome Location	chr6:14107177-14107178
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:14107086..14110343-chr6:14133128..14135812,3	K562	blood:
2	chr6:14106946..14109197-chr6:14110134..14112699,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10080702	0.87[YRI][hapmap];0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10080734	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10484346	1.00[EUR][1000 genomes]
rs11965901	1.00[EUR][1000 genomes]
rs13208593	0.82[AFR][1000 genomes]
rs16874553	1.00[EUR][1000 genomes]
rs16874594	1.00[EUR][1000 genomes]
rs2068206	1.00[EUR][1000 genomes]
rs55875628	1.00[EUR][1000 genomes]
rs56297167	1.00[EUR][1000 genomes]
rs57376077	1.00[EUR][1000 genomes]
rs60371731	1.00[EUR][1000 genomes]
rs61291802	1.00[EUR][1000 genomes]
rs61466290	1.00[EUR][1000 genomes]
rs6911430	1.00[EUR][1000 genomes]
rs73364380	1.00[EUR][1000 genomes]
rs73366305	1.00[EUR][1000 genomes]
rs73366310	1.00[EUR][1000 genomes]
rs73366314	1.00[EUR][1000 genomes]
rs73366326	1.00[EUR][1000 genomes]
rs73366337	1.00[EUR][1000 genomes]
rs73369927	1.00[EUR][1000 genomes]
rs73369944	1.00[EUR][1000 genomes]
rs73369946	1.00[EUR][1000 genomes]
rs73369951	1.00[EUR][1000 genomes]
rs73373532	1.00[EUR][1000 genomes]
rs73373534	1.00[EUR][1000 genomes]
rs73724053	1.00[EUR][1000 genomes]
rs7757894	1.00[EUR][1000 genomes]
rs9464655	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9464656	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9464658	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9476487	1.00[EUR][1000 genomes]
rs9476498	0.87[YRI][hapmap]
rs9476503	0.87[YRI][hapmap];0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9476505	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9476506	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027179	chr6:14058703-14223055	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14106200-14109000	Enhancers	Primary B cells from peripheral blood	blood
2	chr6:14106600-14108200	ZNF genes & repeats	GM12878-XiMat	blood
3	chr6:14106800-14109200	Enhancers	Primary B cells from cord blood	blood
4	chr6:14107000-14107600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:14107000-14107800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
6	chr6:14107000-14107800	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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