Variant report

Variant	rs9476498
Chromosome Location	chr6:14099928-14099929
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:13812475..13815322-chr6:14098901..14101615,2	MCF-7	breast:
2	chr6:14095663..14097527-chr6:14099167..14100821,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000050393	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs13197082	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13205148	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13208593	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2010219	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28384442	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34028524	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34228221	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35118414	0.82[EUR][1000 genomes]
rs35293970	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35360116	0.89[EUR][1000 genomes]
rs3734666	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs58108489	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59407943	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59545453	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61391899	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6933861	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71562496	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71562497	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71562498	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71562501	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71562502	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs71564303	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476497	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476499	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027179	chr6:14058703-14223055	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14088600-14103400	Enhancers	Primary B cells from peripheral blood	blood
2	chr6:14092400-14101200	Weak transcription	Adipose Nuclei	Adipose
3	chr6:14094000-14100200	Weak transcription	Spleen	Spleen
4	chr6:14095000-14100400	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr6:14095200-14100200	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr6:14097600-14102600	Weak transcription	GM12878-XiMat	blood
7	chr6:14099400-14100600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:14099800-14106800	Weak transcription	Primary B cells from cord blood	blood

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