Variant report

Variant	rs61391899
Chromosome Location	chr6:14093968-14093969
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:14085656..14087271-chr6:14091760..14094440,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs13197082	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13205148	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13208593	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2010219	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28384442	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34028524	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34228221	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35118414	0.85[EUR][1000 genomes]
rs35293970	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35360116	0.93[EUR][1000 genomes]
rs3734666	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs58108489	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59407943	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59545453	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6933861	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71562496	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71562497	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71562498	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71562501	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71562502	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs71564303	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476497	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476498	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476499	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027179	chr6:14058703-14223055	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14088600-14103400	Enhancers	Primary B cells from peripheral blood	blood
2	chr6:14089600-14095000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:14089600-14095000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:14091200-14094600	Flanking Active TSS	GM12878-XiMat	blood
5	chr6:14091200-14095200	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr6:14091400-14099800	Enhancers	Primary B cells from cord blood	blood
7	chr6:14092400-14101200	Weak transcription	Adipose Nuclei	Adipose
8	chr6:14092800-14094400	Enhancers	Brain Hippocampus Middle	brain
9	chr6:14093000-14095600	Enhancers	Hela-S3	cervix
10	chr6:14093200-14094000	Enhancers	Brain Anterior Caudate	brain
11	chr6:14093200-14094000	Enhancers	NHEK	skin
12	chr6:14093400-14096400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr6:14093600-14094000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr6:14093600-14094400	Enhancers	Brain Angular Gyrus	brain
15	chr6:14093600-14095000	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr6:14093600-14096800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
17	chr6:14093800-14094000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
18	chr6:14093800-14094000	Enhancers	Spleen	Spleen
19	chr6:14093800-14095000	Enhancers	Brain Substantia Nigra	brain
20	chr6:14093800-14095400	Enhancers	Primary hematopoietic stem cells short term culture	blood

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