Variant report

Variant	rs3734666
Chromosome Location	chr6:14120568-14120569
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs13197082	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13205148	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13208593	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2010219	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28384442	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34028524	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34228221	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35118414	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35293970	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35360116	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58108489	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59407943	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59545453	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61391899	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6933861	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs71562496	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs71562497	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs71562498	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs71562501	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs71562502	0.89[EUR][1000 genomes]
rs71564303	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9476497	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9476498	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9476499	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027179	chr6:14058703-14223055	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14118200-14124000	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
2	chr6:14118600-14120600	Active TSS	Fetal Adrenal Gland	Adrenal Gland
3	chr6:14118600-14122400	Weak transcription	K562	blood
4	chr6:14118600-14134600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:14118800-14120800	Transcr. at gene 5' and 3'	Primary B cells from peripheral blood	blood
6	chr6:14118800-14121000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr6:14118800-14121200	Transcr. at gene 5' and 3'	Primary B cells from cord blood	blood
8	chr6:14118800-14124400	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
9	chr6:14118800-14124600	Weak transcription	Psoas Muscle	Psoas
10	chr6:14118800-14128000	Weak transcription	Fetal Stomach	stomach
11	chr6:14118800-14128400	Weak transcription	Thymus	Thymus
12	chr6:14118800-14129400	Weak transcription	Fetal Intestine Small	intestine
13	chr6:14118800-14129600	Weak transcription	Brain Angular Gyrus	brain
14	chr6:14118800-14130000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr6:14119000-14120800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
16	chr6:14119000-14121800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr6:14119000-14122000	Weak transcription	Spleen	Spleen
18	chr6:14119000-14126600	Weak transcription	Fetal Muscle Trunk	muscle
19	chr6:14119000-14127800	Weak transcription	Stomach Smooth Muscle	stomach
20	chr6:14119000-14128200	Weak transcription	Rectal Smooth Muscle	rectum
21	chr6:14119000-14128400	Weak transcription	Fetal Muscle Leg	muscle
22	chr6:14119000-14131600	Weak transcription	Lung	lung
23	chr6:14119000-14134600	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr6:14119000-14144800	Weak transcription	Left Ventricle	heart
25	chr6:14119200-14122400	Weak transcription	Primary hematopoietic stem cells	blood
26	chr6:14119200-14127800	Weak transcription	Brain Hippocampus Middle	brain
27	chr6:14119200-14127800	Weak transcription	Colon Smooth Muscle	Colon
28	chr6:14119200-14129200	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr6:14119200-14129600	Weak transcription	Brain Cingulate Gyrus	brain
30	chr6:14119400-14120600	Active TSS	Monocytes-CD14+_RO01746	blood
31	chr6:14119400-14121800	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr6:14119400-14122000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr6:14119400-14122000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr6:14119400-14129400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr6:14119400-14129400	Weak transcription	Fetal Brain Male	brain
36	chr6:14119400-14130400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr6:14119400-14131600	Weak transcription	Primary T cells fromperipheralblood	blood
38	chr6:14119400-14133000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr6:14119400-14135800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
40	chr6:14119600-14120600	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr6:14119600-14120800	Enhancers	Breast Myoepithelial Primary Cells	Breast
42	chr6:14119600-14122200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
43	chr6:14119600-14128000	Weak transcription	Fetal Lung	lung
44	chr6:14119600-14134600	Weak transcription	Duodenum Mucosa	Duodenum
45	chr6:14119800-14120600	Active TSS	GM12878-XiMat	blood
46	chr6:14119800-14122600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr6:14119800-14124000	Weak transcription	Primary T cells from cord blood	blood
48	chr6:14119800-14128800	Weak transcription	Fetal Kidney	kidney
49	chr6:14119800-14134600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
50	chr6:14120000-14121000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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