Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:14090122..14092957-chr6:14095138..14097439,3	K562	blood:
2	chr6:14085568..14087861-chr6:14090105..14091859,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs13197082	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13205148	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13208593	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2010219	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28384442	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34028524	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34228221	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35118414	0.85[EUR][1000 genomes]
rs35293970	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35360116	0.93[EUR][1000 genomes]
rs3734666	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs58108489	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59407943	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59545453	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61391899	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6933861	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71562497	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71562498	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71562501	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71562502	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs71564303	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476497	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476498	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476499	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027179	chr6:14058703-14223055	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14086400-14091400	Weak transcription	Primary B cells from cord blood	blood
2	chr6:14088600-14103400	Enhancers	Primary B cells from peripheral blood	blood
3	chr6:14088800-14090200	Enhancers	HMEC	breast
4	chr6:14089000-14090200	Enhancers	Placenta	Placenta
5	chr6:14089200-14090200	Enhancers	Spleen	Spleen
6	chr6:14089400-14093400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr6:14089600-14090800	Weak transcription	NHEK	skin
8	chr6:14089600-14095000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr6:14089600-14095000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:14089800-14090200	Weak transcription	Hela-S3	cervix
11	chr6:14090000-14090200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr6:14090000-14090400	Flanking Active TSS	GM12878-XiMat	blood

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