Variant report

Variant	rs13208593
Chromosome Location	chr6:14104885-14104886
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10080702	0.87[YRI][hapmap]
rs13197082	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13205148	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2010219	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28384442	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34028524	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34228221	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35118414	0.82[EUR][1000 genomes]
rs35293970	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35360116	0.89[EUR][1000 genomes]
rs3734666	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs58108489	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59407943	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59545453	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61391899	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6933861	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71562496	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71562497	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71562498	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71562501	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71562502	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs71564303	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9464655	0.82[AFR][1000 genomes]
rs9464656	0.82[AFR][1000 genomes]
rs9464658	0.82[AFR][1000 genomes]
rs9476497	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476498	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476499	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476502	0.82[AFR][1000 genomes]
rs9476503	0.87[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027179	chr6:14058703-14223055	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14099800-14106800	Weak transcription	Primary B cells from cord blood	blood
2	chr6:14103400-14106200	Weak transcription	Primary B cells from peripheral blood	blood
3	chr6:14103600-14105000	Weak transcription	GM12878-XiMat	blood
4	chr6:14104400-14105200	Enhancers	ES-I3 Cell Line	embryonic stem cell

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