Variant report

Variant	rs9476503
Chromosome Location	chr6:14112957-14112958
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:14112824..14115645-chr6:14117420..14120304,3	MCF-7	breast:
2	chr6:14112142..14114989-chr6:14116943..14119067,4	K562	blood:
3	chr6:14107830..14114797-chr6:14115908..14119067,6	K562	blood:
4	chr6:14110518..14112309-chr6:14112614..14114768,2	K562	blood:

Variant related genes	Relation type
ENSG00000112149	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10080702	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10080734	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10484346	1.00[EUR][1000 genomes]
rs11965901	1.00[EUR][1000 genomes]
rs16874553	1.00[EUR][1000 genomes]
rs16874594	1.00[EUR][1000 genomes]
rs2068206	1.00[EUR][1000 genomes]
rs55875628	1.00[EUR][1000 genomes]
rs56297167	1.00[EUR][1000 genomes]
rs57376077	1.00[EUR][1000 genomes]
rs60371731	1.00[EUR][1000 genomes]
rs61291802	1.00[EUR][1000 genomes]
rs61466290	1.00[EUR][1000 genomes]
rs6911430	1.00[EUR][1000 genomes]
rs73364380	1.00[EUR][1000 genomes]
rs73366305	1.00[EUR][1000 genomes]
rs73366310	1.00[EUR][1000 genomes]
rs73366314	1.00[EUR][1000 genomes]
rs73366326	1.00[EUR][1000 genomes]
rs73366337	1.00[EUR][1000 genomes]
rs73369927	1.00[EUR][1000 genomes]
rs73369944	1.00[EUR][1000 genomes]
rs73369946	1.00[EUR][1000 genomes]
rs73369951	1.00[EUR][1000 genomes]
rs73373532	1.00[EUR][1000 genomes]
rs73373534	1.00[EUR][1000 genomes]
rs73724053	1.00[EUR][1000 genomes]
rs7757894	1.00[EUR][1000 genomes]
rs9464655	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9464656	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9464658	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9476487	1.00[EUR][1000 genomes]
rs9476502	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9476505	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9476506	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027179	chr6:14058703-14223055	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14110000-14117200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr6:14110200-14117000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:14110200-14117200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr6:14110400-14117200	Weak transcription	Primary B cells from cord blood	blood
5	chr6:14110400-14117400	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr6:14110400-14117400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr6:14110600-14113800	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr6:14111000-14117400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr6:14111200-14116600	Weak transcription	K562	blood
10	chr6:14111400-14117000	Weak transcription	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links